Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0638 ATGGCTTCCGAACCCGATGTGTCAGAAATCTCCACAATGTTTGAAAGGATGGTGGGAAACAGAGACCTATCTCTGTTCCTCCCCTTTCTCTTTGGCCTATCAAATGCTACTTCTAGAAGAGAGGGTGAAGACTCAGAACATGAAAATGAAAGCTTAGAAAGTCCCCAACGCGAGAGAATCATCTTGATCAACCCTTTCACACAAGGCATGGTGGTGATTGATGGTGCTTCAAGCCTAGAAGCTCTGTTTCGTGATATGGGTAGTGTCAAAAGTGGGCCACCACCAGCTTCTAAAGAATCTATAGATGCTTTGGCAAGTGTTGAAATTGAGGAAGGTGATGAGGGAGAGTGTGTGATTTGCTTGGAGGAGTGGGAAGTTGGTGGGGTGGTGAAAGAAATGCCTTGTAAGCATAAGTTTCATGGGAATTGTGTAGAGAAGTGGTTGGGGATTCATGGGTCTTGCCCTGTTTGTAGATATGAAATGCCTGTTGATGAAGAAATTGTGAAGAAGGGAGATGAAGAGGATGGGGAAGAGAGGAGGAGAAGGATTGGGAGAGAAGTTTGGGTTAGTTTCTCTTTTAATGGTGAAGGAAGAAGAAGTGAGAATTCAAATCAAGCTTCTTCAGATGATTCTAATGATTCTTCATCAAGCCCAAGAGGTGACTCTGAGGCTGTAGATAGTTAG 684 0.4386 MASEPDVSEISTMFERMVGNRDLSLFLPFLFGLSNATSRREGEDSEHENESLESPQRERIILINPFTQGMVVIDGASSLEALFRDMGSVKSGPPPASKESIDALASVEIEEGDEGECVICLEEWEVGGVVKEMPCKHKFHGNCVEKWLGIHGSCPVCRYEMPVDEEIVKKGDEEDGEERRRRIGREVWVSFSFNGEGRRSENSNQASSDDSNDSSSSPRGDSEAVDS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0638 227 SUPERFAMILY RING/U-box 101 164 - -
Mibi12g0638 227 FunFam E3 ubiquitin-protein ligase RNF181 85 164 - -
Mibi12g0638 227 CDD RING-H2_PA-TM-RING 116 158 - -
Mibi12g0638 227 Pfam Ring finger domain 116 158 IPR001841 -
Mibi12g0638 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 164 IPR013083 -
Mibi12g0638 227 SMART ring_2 117 157 IPR001841 -
Mibi12g0638 227 MobiDBLite consensus disorder prediction 195 227 - -
Mibi12g0638 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 50 162 - -
Mibi12g0638 227 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0638 Mibi-ChrMibi12 16185031 16185714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0638 1 199 C3H Transcription Factor Family AT1G26800 53.695 1.20e-64 197