LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi12g0593	ATGGTGAAGCAGAGGAAACTACAGAGTGAAGAAGGAGAAATGAAGAAAGAGAGTGAAGGAGGGGAGATAAAATGGGAAGAAGCAGCAGCCATGGCTGCTAGTCTTCTGAAAGCTCGAAGATCAGGAAGGAAGAGATTCATTGGGGTTCGTCAGAGACCTTCAGGGAGATGGGTGGCTGAAATCAAAGACACAATTCAGAACATAAGAGTTTGGTTAGGGACTTATGATACTGCAGAAGAAGCTGCAAGAGCTTATGATGAAGCAGCTTGCTTGCTTCGTGGCGCCAACACTCGCAGAAACTTCTGGCCATCTCAGTTTAATGATAACAATAATTCCCCATCATCACCAAATAATCCAGTTCTTCCCAGAAAGATCGCTAATCTCATCCTTCTTAGGCTCAAAGCTCGAAACCTTGCTTCTTCTTGCCATTTTCCAAGTAACCAAACAGAAGAAGAGCCAAAGACGCAGCTTGATCATTTTCTTGATGGGTCTGATAAAGGTAATGGGTATTTCATTGATAGTGGTGAATTTTCTAGTACTGAATTTTCTTGTCATTTCCCAAGTGACAACCAAACAGTAAGCCAACAGTTGAACAACTTTGTGGATGAGTCATCAGACAATTGTTTTCTCACAAACGTAGTCAATTTTAGACCAGGAAACAAAACTAACTTGTTGGATGAAATAGGATTTAACGAAGGAAATGATGGGAAGAAGTTGAAGATGGATGAGGAAAATATTGAAAGTAGTAGGAGGGAAAAAGAGAGTTTTGATGATGAGGAATATTGTGATATGGGGCTTATGGATTTCCAGATTTTAGAAAATAATGTTGGATCGATTTGTGATTCTTCTGCATTTGAGATAGCAGAAGAGATGATGGGGCCAATAATGGATCAGCAAGACGAAGCGTATGAAAATGATGAAGCATCATTTCTAAGAGAAAGTTTTAGGATGAAGTATGAACGGAAATTCTCAGCTTGTCTTTATACCTATGTTGGTGTTTCTGAGTGCTTGAGGCTGCAATTTGGAGCAGAAAATTTCTGA	1041	0.3987	MVKQRKLQSEEGEMKKESEGGEIKWEEAAAMAASLLKARRSGRKRFIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDTAEEAARAYDEAACLLRGANTRRNFWPSQFNDNNNSPSSPNNPVLPRKIANLILLRLKARNLASSCHFPSNQTEEEPKTQLDHFLDGSDKGNGYFIDSGEFSSTEFSCHFPSDNQTVSQQLNNFVDESSDNCFLTNVVNFRPGNKTNLLDEIGFNEGNDGKKLKMDEENIESSRREKESFDDEEYCDMGLMDFQILENNVGSICDSSAFEIAEEMMGPIMDQQDEAYENDEASFLRESFRMKYERKFSACLYTYVGVSECLRLQFGAENF	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi12g0593	346	SUPERFAMILY	DNA-binding domain	45	103	IPR016177	GO:0003677
	Mibi12g0593	346	ProSiteProfiles	AP2/ERF domain profile.	45	102	IPR001471	GO:0003700\|GO:0006355
	Mibi12g0593	346	Gene3D	AP2/ERF domain	44	102	IPR036955	GO:0003700\|GO:0006355
	Mibi12g0593	346	CDD	AP2	44	101	IPR001471	GO:0003700\|GO:0006355
	Mibi12g0593	346	Coils	Coil	239	259	-	-
	Mibi12g0593	346	MobiDBLite	consensus disorder prediction	1	21	-	-
	Mibi12g0593	346	FunFam	ethylene-responsive transcription factor RAP2-11	44	103	-	-
	Mibi12g0593	346	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	17	323	-	-
	Mibi12g0593	346	SMART	rav1_2	45	108	IPR001471	GO:0003700\|GO:0006355
	Mibi12g0593	346	PRINTS	Ethylene responsive element binding protein signature	46	57	IPR001471	GO:0003700\|GO:0006355
	Mibi12g0593	346	PRINTS	Ethylene responsive element binding protein signature	68	84	IPR001471	GO:0003700\|GO:0006355
	Mibi12g0593	346	Pfam	AP2 domain	45	94	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi12g0593	Mibi-ChrMibi12	14616796	14617836	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi12g0593	40	129	AP2-EREBP Transcription Factor Family	AT5G19790	62.222	2.86e-30	114

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi12g0593		AP2	4.6e-15	CL0081