Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0513 ATGCATCATACCATACCATCACTGTATTGTGAATTGTTGCAGCTAGCGATGCAAGGTGTGCAGAAGAACACACTATATGTTGGAGGCCTAGCGGAAGAAGTGAACGAATCTATTCTTCACGCTGCATTCATTCCTTTTGGTGACATCAAAGACGTTAAAACGCCTCTTGATCAGGCCACTCAGAAGCATCGCTCTTTCGGATTCGTCACCTTCTTGGAGAGAGAGGATGCATCAGCCGCCATGGATAATATGGACGGCTCTGAACTTTACGGCCGTGTTCTTACTGTTAATTACGCCCTTCCTGAGAAAATTAAGGGTGGTGAACAGGGTTGGGCTGCTCAGCCAATTTGGGCGGATGCGGATACTTGGTTTGAGCGGCAGCAGCAAGAAGAGGAAATGCGTCGAATTGAGGCAGAAAATCGAGCTGCAATGCAGGCTGCAGAAGACATACGCAGAAAACAACTAGCCCAAGAGCGAGAAGGAGAAAAGGAAGAGGAAATTGACATGAAAGATGATCATATGGCAAAGGCTGAAGCAGAAGTTCTGCAAGAAAATGGTTCTTAA 564 0.4645 MHHTIPSLYCELLQLAMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGSELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDIRRKQLAQEREGEKEEEIDMKDDHMAKAEAEVLQENGS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0513 187 Coils Coil 126 153 - -
Mibi12g0513 187 CDD RRM_PPIE 25 97 IPR034168 GO:0003723
Mibi12g0513 187 SUPERFAMILY RNA-binding domain, RBD 11 110 IPR035979 GO:0003676
Mibi12g0513 187 SMART rrm1_1 24 97 IPR000504 GO:0003723
Mibi12g0513 187 PANTHER ATPASE E1 10 185 - -
Mibi12g0513 187 FunFam Peptidyl-prolyl cis-trans isomerase 15 168 - -
Mibi12g0513 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 94 IPR000504 GO:0003723
Mibi12g0513 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Mibi12g0513 187 MobiDBLite consensus disorder prediction 145 172 - -
Mibi12g0513 187 Gene3D - 14 166 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0513 Mibi-ChrMibi12 12292600 12294309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0513 23 101 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.18e-11 59.3