Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0501 ATGGTGGGCGGGTTGAAGGGGCCCATCTTCCTTCTCTCTGGTCCTTCATCGCGCGCCGTTCACCGTTCGCCTCGCCGTTCCGTCGTTCGTCCGCCGTCCTCCCTTCCACCGTTCGTCTGCCGCGTCGTCGCTGTTCAGTGGGTTTCTGCAACTATTTGTATTTCTCCAATGGAGGTTAATCCACCAGAGACCTCTAGTCAACATCAAAAGAGAAAGACTAGGAGAAAAAGAAGCCAGGAAGACCCAGAACTCGAACGACTGGACTCATTGTCGTGGAATCCTTCTCTTTCTGAGAATGATGATCCTTTTTCTTTGCTTGTAGGCTCAAATGAACTTGAAGGAGGTTTCCTTTCACTGGAAGAGATCGATGAAGCTGAGTATGGTTTAGAAATTCCAGATCTCAAAGAAGGCAGGGGGAAGAAGAAGTCTAAACATACTGCAGATTTGAATAAACAGAAGCTAAGTGAACTAGAGGGTGCCTGTAATGATGAGACTGGGGCGAATTTTGAAGAAAGCAAGGATGAGAATGTGATGACTATGAAGAAGGAAAAGAAGAAAAAGAAGAAGAAGAAAAAGGATGTTGCTGATCAAGTTATTAATGTGAAGAATGATAATGATGAAGAGGACATTGATGAAATGGAATTTTATGAATGGAATGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATTTACAATCTTGGATTCAAGGAGCCCACGCCAATACAGAAGGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTTCTGAGACTGGATCTGGGAAAACTCTTGCTTTTGGTTTGCCCATTCTGCAACGCCTTTTAGAGGAGAGGGAGAAGGCTGCAAAGATGGTTGAACAAAGGGGTGAAGAACCTGACAAATATGCTCCTACTGACCTTCTAAGGGCTCTGATAATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAATATATCAATGTTAGGGTAACTCCTATAGTTGGGGGCATTTTAGCAGAAAAACAGGAGAGACTCTTGAAAGCAAGGCCTGAGATTATTGTTGGAACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAGTTGAGTTACACTCCTTGTCATTCTTTGTGCTCGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGTCGAACACGTCTGGTGCGGATGATCCTCGATCTGCTCAAAATTGTGTTACAATTTCAAGCTACCAGAGAAAGAAAAGACAAACTCTAGTTTTTTCAGCAACTGTTGCACTATCAGCTGATTTTCGCAAGAAGCTGAAGCGTGCTTCTATAAAACAAAATCAATCAGTGTTAGATGGTTTTAATTCCATTGAAGCCCTGTCGGAACGTGCAGGAATGAGGCCCAATGCTGCAGTTATTGATCTCACTAATGCAACAATATTGGCAGCCAAGCTTGAAGAATCATTTCTTGAATGCAAAGAAGAAGACAAAGATGCTTATCTGTACTATATATTGACTGTCCATAGACAAGGCCGCACCATAGTATTCTGTACATCAATTGCAGCTTTGCGTCATATCTCTTCTTTATTGCACATTCTTGGCATTAACGCTTGTACTCTTCATGCTCAAATGCAGCAGCGAGCACGTTTAAAGGCTATTGATCGTTTTCGTGAAGATGAAAATGGCATACTCGTTGCTACTGATGTTGCAGCTAGGGGTCTTGATGTTCCCGGTGTTAGAGCAGTTGTCCACTATCAGCTTCCTCATTCAGCCGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCTTTAATCTCACCAAAAGATACAATAAAGTTTGGTTCATTGTGCAAGTCCTTTTCCAAGGACACTTTTCAACGATTTCCTTTAGAGAACTCATACATGCCAGAAGTTCTAAAGCGACTGTCTATTGCCCGTCAAATAGACAAAATAATACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGAGGAATGCTGAATCAGTAGAGTTACTTGTGGAAAATTATGACAGTGAGGAGGAAAGAGTGAAGAAATTTAAGGAAATGAAAGCCTGCTCTACTCAGTTGAAGAAGTTGCAGCAGGAGCTCAATGCGCTTCTTTCACGCCCTTTACAGTGTAAACAATTTTCACATCGATATTTAGCTGGGGCAGGGGTCACTCCTTTGATGCAGGAACAGTTCCAACAATTAGTCCGGCAGAAACAAGGAAGTGCAGGAGTAACTGGCAAGGGCAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCACTTCAGGCTTTACGGAATGCAGGTGAAGAGGTGCGCATGAACGTCAAGGGAATGACAGGAAAGAGGAGGGAGAATTTGAAACGAAAGAGAAAAGAAGAGAAAAAACGTTTGCGTGACCAGCGAAGGAAGCAAAAGAAAAAGATGAAAATGGAGAATGAATAG 2541 0.429 MVGGLKGPIFLLSGPSSRAVHRSPRRSVVRPPSSLPPFVCRVVAVQWVSATICISPMEVNPPETSSQHQKRKTRRKRSQEDPELERLDSLSWNPSLSENDDPFSLLVGSNELEGGFLSLEEIDEAEYGLEIPDLKEGRGKKKSKHTADLNKQKLSELEGACNDETGANFEESKDENVMTMKKEKKKKKKKKKDVADQVINVKNDNDEEDIDEMEFYEWNELRLHPLLMKAIYNLGFKEPTPIQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKAAKMVEQRGEEPDKYAPTDLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNTSGADDPRSAQNCVTISSYQRKKRQTLVFSATVALSADFRKKLKRASIKQNQSVLDGFNSIEALSERAGMRPNAAVIDLTNATILAAKLEESFLECKEEDKDAYLYYILTVHRQGRTIVFCTSIAALRHISSLLHILGINACTLHAQMQQRARLKAIDRFREDENGILVATDVAARGLDVPGVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTIKFGSLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKIIRKDSQEKAQKSWFERNAESVELLVENYDSEEERVKKFKEMKACSTQLKKLQQELNALLSRPLQCKQFSHRYLAGAGVTPLMQEQFQQLVRQKQGSAGVTGKGKLVVIGQDCVEALQALRNAGEEVRMNVKGMTGKRRENLKRKRKEEKKRLRDQRRKQKKKMKMENE 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0501 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 637 IPR027417 -
Mibi12g0501 846 MobiDBLite consensus disorder prediction 58 95 - -
Mibi12g0501 846 MobiDBLite consensus disorder prediction 815 838 - -
Mibi12g0501 846 PANTHER RNA HELICASE 182 817 - -
Mibi12g0501 846 Coils Coil 699 739 - -
Mibi12g0501 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 411 IPR027417 -
Mibi12g0501 846 SMART helicmild6 542 623 IPR001650 -
Mibi12g0501 846 CDD SF2_C_DEAD 503 632 - -
Mibi12g0501 846 Pfam Helicase conserved C-terminal domain 514 622 IPR001650 -
Mibi12g0501 846 MobiDBLite consensus disorder prediction 172 194 - -
Mibi12g0501 846 Gene3D - 494 744 IPR027417 -
Mibi12g0501 846 CDD DEADc_DDX24 227 492 - -
Mibi12g0501 846 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 465 IPR014001 -
Mibi12g0501 846 Gene3D - 173 467 IPR027417 -
Mibi12g0501 846 Coils Coil 816 846 - -
Mibi12g0501 846 MobiDBLite consensus disorder prediction 812 846 - -
Mibi12g0501 846 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 387 395 IPR000629 -
Mibi12g0501 846 Coils Coil 276 296 - -
Mibi12g0501 846 Pfam DEAD/DEAH box helicase 240 448 IPR011545 GO:0003676|GO:0005524
Mibi12g0501 846 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 216 244 IPR014014 GO:0003724
Mibi12g0501 846 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 663 IPR001650 -
Mibi12g0501 846 SMART ultradead3 235 475 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0501 Mibi-ChrMibi12 11833323 11849706 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0501 218 633 Eukaryotic Initiation Factors Gene Family AT5G11200 28.810 1.44e-40 154