Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi12g0418 | ATGCTCTTCAACTTCCTCAAGCTGGTTTTCTCCCATTTCAAATGGGTTTTAGAGTTCCTTCTTTACCACCCATTTCAAAGCCTTCGTCTTCGTCATCATCAACCTCTTCAAGAGTTTCATCATATCCTTACCGAAGAAGAAGAAGAACGAGTCCAAACATGGCATACTCGAGAAGGAGAAGGAGAAGAAGTGGATTGTGCAGTGTGTCTGAACAAGATTGGTGAAGGAGAAGAAGTTAGAGTGTTGAGATGTGAACATATTTTTCATAGAGATTGTTTGAATCAATGGGTTGGTCTCGGTAACTATACTTGTCCTCTTTGCAGGGACTTTCTGGGTTCTGGGAATAGGCCTGTTAATGGTGGTGAGAGAGAAGGAGCAATACATGTGCTTCTCTTTAAGTTTTCTTCATTCTCTGAGAACTCTGACAGTGATAACTGGTGGTTACGGTGA | 450 | 0.4178 | MLFNFLKLVFSHFKWVLEFLLYHPFQSLRLRHHQPLQEFHHILTEEEEERVQTWHTREGEGEEVDCAVCLNKIGEGEEVRVLRCEHIFHRDCLNQWVGLGNYTCPLCRDFLGSGNRPVNGGEREGAIHVLLFKFSSFSENSDSDNWWLR | 149 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi12g0418 | 149 | Pfam | Ring finger domain | 65 | 108 | IPR001841 | - | |
| Mibi12g0418 | 149 | SMART | ring_2 | 66 | 107 | IPR001841 | - | |
| Mibi12g0418 | 149 | ProSiteProfiles | Zinc finger RING-type profile. | 66 | 108 | IPR001841 | - | |
| Mibi12g0418 | 149 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 39 | 111 | - | - | |
| Mibi12g0418 | 149 | SUPERFAMILY | RING/U-box | 52 | 112 | - | - | |
| Mibi12g0418 | 149 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 112 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi12g0418 | Mibi-ChrMibi12 | 8939091 | 8939540 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi12g0418 | 1 | 115 | C3H Transcription Factor Family | AT1G15100 | 33.898 | 4.34e-16 | 68.9 |