Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0385 ATGGACGCAGGAAGTTCCATGGACGAAAGCATTACTACTGATTCACTCTCCGTTTCCCTTTCTCCGGCGGCGATAATTCCGTCGAAACCGCTGCCGCCAAACAGCCTATGCCGCGTCGGCAGCGGAGCCAGCACGATCGTCGACTCCGACATCGTCGGGGCCGGTGCCGAAGCCGAGTCCCGGAAGCTGCCGTCGTCGAAATACAAAGGCGTAGTGCCTCAGCCCAATGGCCGTTGGGGAGCTCAGATTTATGAGAAGCACCAGAGGGTCTGGTTGGGCACCTTCAACGAAGAAGACGAGGCCGCTAGAGCCTACGACATCGCCGCGCAACGATTCCGCGGCCGAGACGCCGTCACAAACTTCAAAACCCTCGCCGGGGCCGGCGCCGGCGTAATCTCCGGCGCCGGCGACGGGGACGATCACGGCCTCGAATCGGCGTTCCTCGACGTGCATTCGAAAGCCGAGATCGTCGACATGCTAAGGAAGCACACTTACAACGACGAGCTGGAACAATTCAAGAGGAATTACGGGTTAACGGTGGACGTGAACGGGAAACGGGTAATCCGGGAAGCGTCCGGCAAGAATTCCGGTCGGGTCAACCGCGAACGGGATCAGCTCTTCGAGAAGGCGGTCACGCCGAGCGATGTCGGGAAGCTGAACCGGCTGGTGATCCCGAAGCAGCACGCCGAGAAGCACTTCCCGTTGCCGGCGCCGCCGTGCACGGCGGCTCCGGCGACGGCGGCCACCGCAGCTGCCGCGAAGGGCTTGCTTTTGAATTTCGAGGACGGTGGCGGGAAGGTTTGGCGGTTCAGGTATTCCTACTGGAATAGTAGCCAGAGTTATGTGCTAACCAAAGGATGGAGCCGGTTCGTTAAGGAGAAGAATCTTAAGGCCGGAGATACGGTTTTTTTCGCGCGCTCGACCGGGCCGGACGGGCAATTGTACATAGATTGGAAGAAAACCGGGATTAGTGCTGCGGAGGTTTGTAGTAGTGGTACAAATTCAGGGGGAGCTGAATTGATTGAACCGGCCGGTTCAGTTGTGGGGCCGGTTCAGATGGTGAGATTGTTTGGGGTTAATATTTTGAAGATGTCCGGTTCAGATGCTTCTGCTGCTGCTAGTGCTAGTGGGTGTTGTAATGGGAAGAGAAGAGAGATGGATCTCTTCTCTTTGGAATGTACCAAAAAGCCAAAGATTATTGGAGCTTTGTAA 1212 0.5693 MDAGSSMDESITTDSLSVSLSPAAIIPSKPLPPNSLCRVGSGASTIVDSDIVGAGAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKTLAGAGAGVISGAGDGDDHGLESAFLDVHSKAEIVDMLRKHTYNDELEQFKRNYGLTVDVNGKRVIREASGKNSGRVNRERDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPAPPCTAAPATAATAAAAKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVFFARSTGPDGQLYIDWKKTGISAAEVCSSGTNSGGAELIEPAGSVVGPVQMVRLFGVNILKMSGSDASAAASASGCCNGKRREMDLFSLECTKKPKIIGAL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0385 403 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Mibi12g0385 403 ProSiteProfiles B3 DNA-binding domain profile. 207 322 IPR003340 GO:0003677
Mibi12g0385 403 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 377 IPR044800 GO:0003700
Mibi12g0385 403 CDD B3_DNA 206 316 IPR003340 GO:0003677
Mibi12g0385 403 Pfam B3 DNA binding domain 207 318 IPR003340 GO:0003677
Mibi12g0385 403 SUPERFAMILY DNA-binding pseudobarrel domain 206 308 IPR015300 -
Mibi12g0385 403 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Mibi12g0385 403 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Mibi12g0385 403 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Mibi12g0385 403 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Mibi12g0385 403 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Mibi12g0385 403 SMART B3_2 207 322 IPR003340 GO:0003677
Mibi12g0385 403 Gene3D - 194 332 IPR015300 -
Mibi12g0385 403 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0385 Mibi-ChrMibi12 8060747 8061958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0385 1 403 B3 DNA Binding Superfamily AT1G25560 57.524 1.53e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Mibi12g0385 B3 2.5e-27 CL0405