Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0354 ATGAAGGTTTTCGTCAAGACTCTTAAAGGCACTCACTTTGAAATTGAAGTGAACCCACAAGACACGGTTACTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTTTATCCTGCAGCACAACAGATGCTTATCCATCAAGGGAAGGTTCTCAAAGATAACACCACCTTGGAGGAAAATAAAGTAGTTGAAAATAGTTTTATTGTAATTATGCTTTCAAAGAGCAAAAGCTCATCGGGCGAGGGTTCTACTACCACTTCAGCTGCACCTTTAACCAAGACCCCAGCAGCAACTGCTGCTCCCACCTCCACTTCTGTTTCAAGTTCAACTACAGCTCAAGCTCCTGCTGCAGCGCCTGCTCCTTCTCCGTCTCCTGCCCCTGCCCCTGCCCCTGCACCTGCACCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGTTGCTTCAGGCACAGATGTGTCAGAGTCTGATGTCTATGGTCAGGCAGCATCTAACCTTGTAGCTGGAAGCAACTTGGAGGAAACCGTTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTAGTTCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTGGAGTATTTGTACTCAGGTATTCCAGAGCAAGCAGAAGCTCCCCCTGTGGCCCGAGTGCCTGCAAGTCCACAAGCTGCAAATCCTCCAGCACCAGCTCCACAAGCTGCACAGCCAGCACCTGCTCCTACAAGTGGACCAAACGCCAATCCTTTAGACCTTTTCCCCCAGGGCCTTCCCAACGTTGGTTCCGGTGCTGCTGGCGCTGGCACCCTAGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAATCCACAAATACTCCAGCCTATGCTTCAAGAGCTTGGGAAGCAAAATCCTCATCTTATGAGATTAATTCAAGAGCACCAGACTGACTTCCTTCGCCTGATAAATGAACCAACGGAAGGTGGTGAGGGGAACATACTAGGGCAGCTGGCTGGTGCCATGCCTCAACAAATAGCTGTCACCCCTGAGGAGCGAGAAGCAATTGAACGACTTGAAGCAATGGGTTTTGATCGTGCACTCGTATTGGAGGTATACTTTGCTTGCAACAAAAATGAGGAACTGGCTGCAAACTATCTTTTAGACCACATGCATGAGTTTGAGGAATGA 1215 0.493 MKVFVKTLKGTHFEIEVNPQDTVTEVKKNIETVQGADVYPAAQQMLIHQGKVLKDNTTLEENKVVENSFIVIMLSKSKSSSGEGSTTTSAAPLTKTPAATAAPTSTSVSSSTTAQAPAAAPAPSPSPAPAPAPAPAPAPAPAPAPAPVASGTDVSESDVYGQAASNLVAGSNLEETVQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVARVPASPQAANPPAPAPQAAQPAPAPTSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPTEGGEGNILGQLAGAMPQQIAVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0354 404 FunFam UV excision repair protein RAD23 homolog 166 216 - -
Mibi12g0354 404 Gene3D - 270 335 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mibi12g0354 404 FunFam UV excision repair protein RAD23 B 270 335 - -
Mibi12g0354 404 SUPERFAMILY UBA-like 341 402 IPR009060 GO:0005515
Mibi12g0354 404 MobiDBLite consensus disorder prediction 120 146 - -
Mibi12g0354 404 SUPERFAMILY XPC-binding domain 275 341 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mibi12g0354 404 FunFam UV excision repair protein RAD23 1 80 - -
Mibi12g0354 404 SUPERFAMILY UBA-like 170 222 IPR009060 GO:0005515
Mibi12g0354 404 MobiDBLite consensus disorder prediction 77 157 - -
Mibi12g0354 404 SMART ubq_7 1 75 IPR000626 GO:0005515
Mibi12g0354 404 Pfam XPC-binding domain 279 334 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mibi12g0354 404 Gene3D - 351 399 - -
Mibi12g0354 404 FunFam UV excision repair protein RAD23 homolog 351 399 - -
Mibi12g0354 404 PRINTS DNA repair protein Rad23 signature 305 327 IPR004806 GO:0006289
Mibi12g0354 404 PRINTS DNA repair protein Rad23 signature 386 401 IPR004806 GO:0006289
Mibi12g0354 404 PRINTS DNA repair protein Rad23 signature 354 370 IPR004806 GO:0006289
Mibi12g0354 404 PRINTS DNA repair protein Rad23 signature 371 385 IPR004806 GO:0006289
Mibi12g0354 404 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Mibi12g0354 404 CDD Ubl_Rad23 1 74 - -
Mibi12g0354 404 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 171 214 IPR015940 -
Mibi12g0354 404 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mibi12g0354 404 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 393 - -
Mibi12g0354 404 SMART uba_6 360 397 IPR015940 -
Mibi12g0354 404 SMART uba_6 173 213 IPR015940 -
Mibi12g0354 404 Pfam UBA/TS-N domain 360 395 IPR015940 -
Mibi12g0354 404 Pfam UBA/TS-N domain 173 211 IPR015940 -
Mibi12g0354 404 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mibi12g0354 404 Gene3D - 1 80 - -
Mibi12g0354 404 SMART CBM 277 320 IPR006636 -
Mibi12g0354 404 MobiDBLite consensus disorder prediction 229 253 - -
Mibi12g0354 404 MobiDBLite consensus disorder prediction 222 264 - -
Mibi12g0354 404 Gene3D - 166 216 - -
Mibi12g0354 404 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 357 398 IPR015940 -
Mibi12g0354 404 MobiDBLite consensus disorder prediction 77 119 - -
Mibi12g0354 404 CDD UBA1_Rad23_plant 167 216 - -
Mibi12g0354 404 TIGRFAM rad23: UV excision repair protein Rad23 1 403 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0354 Mibi-ChrMibi12 7437732 7442440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0354 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 5.26e-08 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0354 12 7437732 7442440 Mibi12g0354 12 7437732 7442440 ECH