Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0349 ATGCCTGAGCCTCGGAATCAAGGGTCAAATCAGGCGATGAACATGAACAATCCCTGCAGAAAGATGAAGCAGAAGCAAAATCCTGTTCCCTCGAGGAAGCTTCGAATAATCTGTGACGACCCTTATGCCACAGATTCGTCTTCAAGCGAAGAAGACGAAGGAATCCAAAGGATGAGGCCGAAGAAGATGAAGAGAATCGTTCGCGAGCTCAGTCTTCCTCTTCCTTCTGCCATTTCTAAGCCCACTGAGACTGAATCCTCATTTCAGGAGAGCAACAACAATGGTCAAACCCAGAACAAGAAGAGGGTTTTGACCAAAACCCGATCAACGAATAGCTCGAGCTCTTCGAGATTCAGAGGTGTTCGACAGAGGAAATGGGGCAAATGGGCTGCTGAAATCCGTGATCCATTTAAAGGTGTTCGTATCTGGCTCGGTACCTATAACACTGCACTTGAAGCTTCTCAAGCTTATGAAACGAAGAAGATGGAGTTTGAAGCCATGGCTAAGGCTCAACAAGCTCAGCCTCAATCTGAGAAAAGTCACATTGTTTCTTCGTCTTCAGCTCAAGTTGCTGCTTCTGTATCAGAGGATACTGAGAGTGTCTTCTCTCAAACCTCACCTTCCTCTGTGCTTGAACTTGACACCTCAACCTCCAAATCCACTGAAGATGCCAACACCAATACAATCAGTTCAAGCAATGAACAGAACGAGGAACAACCAAAAGAAGGAAATCAACAAGTGGCAGTTGCTCCTGCTGCTGTAGTAGCTATGGAGGCTGAAGATTTTGAGAATGAATTTGCTGAACTACAGATCCCAGATTTGAGCTTCCTGAACGAGCCACCACTTGTACAAGCACCTCCAACATCAACAACATCGGTTAATGTTTCAGACATTAACCTGGGATTCGATCTGGACTGGGCAGTGTTTGATGATTTTGGTCAGGGTTTGGATGATCCATTTTGTTTGGATGACATACCGATTTGTGCTTTTGATGATGAGGATGACAAGAATGCGAGTGAGCTGCCTGATTTTGATTTCGAGCTGTGTGCTGATGAGTTTGCTTGTTGGACTGAAGAGCCCCTCAATATACCTTGCGTATAA 1101 0.4523 MPEPRNQGSNQAMNMNNPCRKMKQKQNPVPSRKLRIICDDPYATDSSSSEEDEGIQRMRPKKMKRIVRELSLPLPSAISKPTETESSFQESNNNGQTQNKKRVLTKTRSTNSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTALEASQAYETKKMEFEAMAKAQQAQPQSEKSHIVSSSSAQVAASVSEDTESVFSQTSPSSVLELDTSTSKSTEDANTNTISSSNEQNEEQPKEGNQQVAVAPAAVVAMEAEDFENEFAELQIPDLSFLNEPPLVQAPPTSTTSVNVSDINLGFDLDWAVFDDFGQGLDDPFCLDDIPICAFDDEDDKNASELPDFDFELCADEFACWTEEPLNIPCV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0349 366 SUPERFAMILY DNA-binding domain 116 164 IPR016177 GO:0003677
Mibi12g0349 366 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Mibi12g0349 366 MobiDBLite consensus disorder prediction 198 247 - -
Mibi12g0349 366 SMART rav1_2 117 181 IPR001471 GO:0003700|GO:0006355
Mibi12g0349 366 MobiDBLite consensus disorder prediction 1 121 - -
Mibi12g0349 366 MobiDBLite consensus disorder prediction 1 24 - -
Mibi12g0349 366 MobiDBLite consensus disorder prediction 198 243 - -
Mibi12g0349 366 ProSiteProfiles AP2/ERF domain profile. 117 175 IPR001471 GO:0003700|GO:0006355
Mibi12g0349 366 MobiDBLite consensus disorder prediction 77 120 - -
Mibi12g0349 366 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Mibi12g0349 366 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Mibi12g0349 366 MobiDBLite consensus disorder prediction 50 68 - -
Mibi12g0349 366 Gene3D AP2/ERF domain 116 171 IPR036955 GO:0003700|GO:0006355
Mibi12g0349 366 CDD AP2 120 157 IPR001471 GO:0003700|GO:0006355
Mibi12g0349 366 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0349 Mibi-ChrMibi12 7335829 7336929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0349 30 365 AP2-EREBP Transcription Factor Family AT1G68550 35.345 1.77e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi12g0349 AP2 2.4e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0349 12 7335829 7336929 Mibi12g0349 12 7335829 7336929 ECH