Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0300 ATGAGTTCTTGTGAACTGTATTACGCTAGATTTGTTCAAGATTCGTTGAAATCTTGTGTAGCGAGAATGCATAATCAGGATGCTTGCTCTTCTTCAAATGGAACCAATGTCGATTCTTCTGGTTTAATGCAGTCGAATGGCGCCATTTTTGGTTCCATGTACTCGACTCTGTTTTCTGAGAAGCCATCCCTGTCAGCTGGTACGGACAATAATGTCGACCTCTCGCTTCATTCTTATGAAGCAAACTCTCAATTGAAGTACAATGACTCGCCGATTCAGAGTCATTTGTATGATTCTTGTGCTGTACAGAATCATCAAGATATGGTTAACCGCCATAGCATGTGCCTGAATCGCCTGGCTGAAACGTCGAAGGAGGTTGAGGCTTTAAGGCAGGAGAATAGCCAACTTAGGGCTGTGAATATGGAGCTGAACAATCAATTGAGCCTCCTCATTCAGGTTTCTGTTCAGAATCAGAATCAATTGGATGGCTCCTCTGGTCATTCTGAAGCGTTTGATGTTATAAATGGGTTTCGTGGCTTGCGTGTTTCGGATAGTTTTGGGGATGGGAAAGAGAACTGTGAGAATTGGAATAAGGATCAAGAGGCTTTGAATGAGAGCCCAACTAGCGTGATTGAGAACAATGTTGAAGTGGAAAGGTTTTCTCTGCCAAAGAGTATATCTGTGAGGTCAAATGGGTATTTGAAGGTTGCTCAGACTACGGCTGCTGGTACCAGCAACAATGGAAGTCGCCCTAAGGGCCCTGCTCGGCCACGTACATCTTTGACTCCTACTGATGTCGTTCAAAAGGTATATGTGCGTGGAGGGAAGAAGGAGGAAGAGCCTCTGGAGATGGTGGTATATAACCAAGGCATGTTCAAGACTGAGCTGTGCAACAAATGGCAGGAGACAGGGACATGCCCCTATAAGGATCAGTGCCAATTTGCTCATGGTATTGGTGAACTCCGCCCAGTCATCCGCCATCCTCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGAGTTGTTTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCATTGCACAGCCTAAGCCCAGCAGGTCAATGAACCTGCACAGATAA 1131 0.4598 MSSCELYYARFVQDSLKSCVARMHNQDACSSSNGTNVDSSGLMQSNGAIFGSMYSTLFSEKPSLSAGTDNNVDLSLHSYEANSQLKYNDSPIQSHLYDSCAVQNHQDMVNRHSMCLNRLAETSKEVEALRQENSQLRAVNMELNNQLSLLIQVSVQNQNQLDGSSGHSEAFDVINGFRGLRVSDSFGDGKENCENWNKDQEALNESPTSVIENNVEVERFSLPKSISVRSNGYLKVAQTTAAGTSNNGSRPKGPARPRTSLTPTDVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPKPSRSMNLHR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0300 376 FunFam zinc finger CCCH domain-containing protein 15-like 285 324 - -
Mibi12g0300 376 SUPERFAMILY CCCH zinc finger 288 323 IPR036855 GO:0046872
Mibi12g0300 376 ProSiteProfiles Zinc finger C3H1-type profile. 291 319 IPR000571 GO:0046872
Mibi12g0300 376 SMART c3hfinal6 329 356 IPR000571 GO:0046872
Mibi12g0300 376 SMART c3hfinal6 291 318 IPR000571 GO:0046872
Mibi12g0300 376 PANTHER CCCH ZINC FINGER/TIS11-RELATED 104 364 IPR045877 GO:0003729
Mibi12g0300 376 MobiDBLite consensus disorder prediction 239 253 - -
Mibi12g0300 376 ProSiteProfiles Zinc finger C3H1-type profile. 329 357 IPR000571 GO:0046872
Mibi12g0300 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 292 317 IPR000571 GO:0046872
Mibi12g0300 376 Coils Coil 119 146 - -
Mibi12g0300 376 Gene3D - 325 361 - -
Mibi12g0300 376 Gene3D - 286 324 - -
Mibi12g0300 376 MobiDBLite consensus disorder prediction 239 261 - -
Mibi12g0300 376 FunFam Zinc finger protein 36, C3H1 type-like 1 325 361 - -
Mibi12g0300 376 SUPERFAMILY CCCH zinc finger 325 359 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0300 96 374 C3H Transcription Factor Family AT1G68200 52.595 4.26e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi12g0300 zf-CCCH 5.1e-10 CL0537