Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0281 ATGGCTTCACGCAGACTCGTATCTTCTCTGATTCGATCTTCCCTTCGTAGATCTTCAATTACCAGCCCCAAACCCAGAATTTCATCTTCCACACCTCCCACTCGTCCTTCTCCATATGGCTACCTCCTAAATCGCATCGCCGATTATGCCACGTCAGCCGCCGTCGCGGCAGCGCCGTCGCCTCCGGCGAAGAAGGACGCCGGAACTGGTGGTGGGAAGATTGTTGATGAGTTTACCGGTAAGGGTGCGATCGGTCAGGTTTGTCAGGTGATTGGTGCGGTTGTTGATGTTAGATTTGAGGAGGGTTTGCCTCCGATCTTGACTGCCCTTGAGGTTATGGACCATTCGATTCGGTTGGTTTTGGAGGTGGCTCAGCATTTGGGTGAGAATATGGTTAGGACTATTGCTATGGATGGTACTGAGGGTGTTGTTAGAGGACAGCGTGTGCTCAATACTGGATCACCTATTACTGTTCCTGTGGGTAGGGCTACCCTTGGACGCATCATTAATGTCATTGGAGAGGCTATTGACGAGAAGGGTGAACTGAAAACTGAGCACTACTTGCCAATTCATCGTGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAACAACAGATCCTTGTTACAGGAATTAAGGTTGTCGACCTGCTTGCACCATACCAAAGAGGTGGGAAGATTGGATTGTTTGGTGGTGCTGGTGTGGGAAAAACTGTGCTTATCATGGAACTTATCAACAACGTTGCAAAGGCTCATGGTGGTTTCTCCGTGTTTGCTGGTGTTGGAGAACGAACCCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGACAAGCAGAGTGAGAGCAAATGTGCCCTTGTGTACGGTCAAATGAACGAGCCCCCTGGTGCCCGTGCCCGTGTTGGTCTGACTGGGCTTACAGTTGCTGAACACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTCTTCATTGATAACATTTTCCGCTTTACCCAAGCCAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCAACCAACCTTGGCAACCGATCTTGGAGGTCTTCAAGAGCGTATCACAACCACCAAGAAGGGTTCAATTACCTCCGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCTGCTACCACTTTTGCTCACTTGGATGCTACAACTGTGTTATCACGACAGATCTCCGAGCTGGGTATCTATCCTGCCGTCGATCCCTTGGATTCTACATCTCGTATGCTTTCACCTCTTATATTGGGTGAGGATCACTACAATACTGCTCGTGGTGTACAAAAAGTGCTTCAGAACTACAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTTAGTGAAGATGATAAGTTGACTGTCGCTCGTGCGCGTAAAATCCAACGTTTCTTGAGCCAGCCTTTCCATGTTGCTGAAGTCTTCACGGGTGCCCCTGGTAAATATGTAGACTTGAAGGAGAGCATCAACAGCTTCCAGGGTGTGTTGGACGGCAAGTATGATGACCTTCCTGAGCAATCATTCTACATGGTTGGAGGTATTGATGAGGTTGTTGCAAAGGCAGATAAGATTGCTAAGGAATCTACATCATAA 1668 0.4808 MASRRLVSSLIRSSLRRSSITSPKPRISSSTPPTRPSPYGYLLNRIADYATSAAVAAAPSPPAKKDAGTGGGKIVDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVMDHSIRLVLEVAQHLGENMVRTIAMDGTEGVVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDEKGELKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLPEQSFYMVGGIDEVVAKADKIAKESTS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0281 555 CDD ATP-synt_F1_beta_C 438 545 - -
Mibi12g0281 555 MobiDBLite consensus disorder prediction 15 38 - -
Mibi12g0281 555 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 210 431 IPR000194 GO:0005524
Mibi12g0281 555 Pfam ATP synthase F1 beta subunit 1 45 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Mibi12g0281 555 CDD F1-ATPase_beta 155 436 - -
Mibi12g0281 555 Gene3D - 74 155 - -
Mibi12g0281 555 Hamap ATP synthase subunit beta [atpB]. 82 549 IPR005722 GO:0015986|GO:0045261|GO:0046933
Mibi12g0281 555 FunFam ATP synthase subunit beta 73 155 - -
Mibi12g0281 555 FunFam ATP synthase subunit beta 156 433 - -
Mibi12g0281 555 Gene3D - 434 555 IPR024034 -
Mibi12g0281 555 CDD ATP-synt_F1_beta_N 83 156 - -
Mibi12g0281 555 PANTHER ATP SYNTHASE 67 552 - -
Mibi12g0281 555 PIRSF ATPase_subunit_beta 1 555 - -
Mibi12g0281 555 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 434 550 - -
Mibi12g0281 555 TIGRFAM atpD: ATP synthase F1, beta subunit 84 548 IPR005722 GO:0015986|GO:0045261|GO:0046933
Mibi12g0281 555 Gene3D ATP synthase, F1 beta subunit 1 49 IPR042079 -
Mibi12g0281 555 MobiDBLite consensus disorder prediction 15 37 - -
Mibi12g0281 555 FunFam ATP synthase subunit beta 434 553 - -
Mibi12g0281 555 Gene3D - 156 433 IPR027417 -
Mibi12g0281 555 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 81 155 IPR036121 GO:0046034|GO:1902600
Mibi12g0281 555 SMART AAA_5 222 494 IPR003593 -
Mibi12g0281 555 Pfam ATP synthase alpha/beta family, beta-barrel domain 87 153 IPR004100 GO:0046034|GO:1902600
Mibi12g0281 555 ProSitePatterns ATP synthase alpha and beta subunits signature. 422 431 IPR020003 GO:0005524
Mibi12g0281 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0281 Mibi-ChrMibi12 6142732 6146146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0281 120 492 Primary Pumps ATPases(2) AT1G20260 28.928 8.80e-29 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0281 12 6142732 6146146 Mibi12g0281 12 6142732 6146146 ECH