Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0243 ATGCCATTCAGAGGTTTTATTCGTGAGCTTAGAGAAATTCGAGATGGCGTGGGTAATATATCTAGAAGAGGGATAGATGCCAAGCGTAATTATTGCCGTGGAAAATCTCTTATTGCACCTGAATTGCCCTCAACAGCATCATCATCTTTGATAGTGTCTGAGCAGAGCCGCTGGGCTAATTTACCACCTGAATTGTTATTAGACATAATTCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCCCGGAAAGCAGTTGTAGCCTGTGCCTCAGTTTGTAGGTCATGGAGAAAAATAACAGAGGAGGTGGTAAAGACACCTGAACAGTGTGGGTGGCTTACATTTCCCATATCACTGCAGCAGCCTGGTCCAAGAGAGACTCCAATACAGTGTTTTATAAAGAGAGAAAGGGCGACTTCAAAATATCGTTTATATCTTGGATTGAGCCCAGCTCTCTCTGGGGATATGAGCAAACTGCTATTGGCAGCAAAGAAGATCAGACGGACAACATGTACAGAATTTTTGATATCCTTGATCGCAGATGATTTTTCTAAAGCAAACAATACTTATGTTGGAAAGCTGAGGTCTAATTTTCTAGGCACCAAGTTCATGATCTTTGATAGTCAGCTTCTACTAGACTCTTCCCTTCCATTGAGTAGTAAATTGCAGCCAAGAATTCATTCAACGCAGGTTCTTCCAAGGGCGGCGGCTGCTGCTGCTGCAAAGAGTAATGTGGCCACCATATGTTATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGCGGTGTACAATGCATTCAATTCCCATTTCTGCCATCCAAGAAGGGGGCACTGCTCTGACTCCTTTGAAGTTTACTAATGGTCTTGATGAACATTCATCTACCGCAAACATATCAAAAGGGGAAAAGCAAGGAGTTGAGCACAACTCCAATTGTGACGACAAGCCCCCAGAATCAAATCACATTGCAGTGGAGCCACTGATTTTGAAAAATAAAGCTCCCAGATGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTAGCAGCCGCAGAGGCTCAACAGAATGTTTCACCTGCAGAACAAGATAGAGTGATACTACAATTTGGGAAGATTGGAAAGGACATTTTCACCATGGATTACCGTTATCCCCTCTCTGCCTTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACGAAACCTGCTTGCGAGTGA 1266 0.4431 MPFRGFIRELREIRDGVGNISRRGIDAKRNYCRGKSLIAPELPSTASSSLIVSEQSRWANLPPELLLDIIQRVEASETSWPARKAVVACASVCRSWRKITEEVVKTPEQCGWLTFPISLQQPGPRETPIQCFIKRERATSKYRLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFLISLIADDFSKANNTYVGKLRSNFLGTKFMIFDSQLLLDSSLPLSSKLQPRIHSTQVLPRAAAAAAAKSNVATICYELNVLRTRGPRRMRCTMHSIPISAIQEGGTALTPLKFTNGLDEHSSTANISKGEKQGVEHNSNCDDKPPESNHIAVEPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEAQQNVSPAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0243 421 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Mibi12g0243 421 Gene3D - 53 105 - -
Mibi12g0243 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Mibi12g0243 421 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Mibi12g0243 421 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Mibi12g0243 421 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Mibi12g0243 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Mibi12g0243 421 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Mibi12g0243 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Mibi12g0243 421 PRINTS Tubby superfamily signature 242 269 IPR000007 -
Mibi12g0243 421 Gene3D Tubby Protein; Chain A 116 421 IPR025659 -
Mibi12g0243 421 Pfam Tub family 119 416 IPR000007 -
Mibi12g0243 421 SUPERFAMILY Tubby C-terminal domain-like 107 421 IPR025659 -
Mibi12g0243 421 PANTHER TUBBY-RELATED 52 419 - -
Mibi12g0243 421 SUPERFAMILY F-box domain 54 121 IPR036047 GO:0005515
Mibi12g0243 421 Pfam F-box domain 58 103 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0243 Mibi-ChrMibi12 5648865 5650873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0243 33 421 TUB Transcription Factor Family AT1G47270 62.785 3.58e-167 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi12g0243 Tub 1.9e-102 CL0395