Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0217 ATGGCCGGCGACGGCGACCGTACGCCGGAGCTCCTTGGCCTCATTCATGACATCGCCGCATTGTACGGCGGCGCAGCCTCCTCCGCCGCCATTGCCGGCGATTCTGTGTTCAAGAAGGATTGCATCGATCTGGTTCGTCGGATCTCACTTCTCTCCCATTTGTTCGAGGAAATTAGGGATTTAAAGGCCGTTAATTCTTCTTCTTCTTCTTCTTCTCCGAATGGCTTTGCCTCTTCCTGGTCCTCTGATCTGGTGTTTGCTTTTCAATCTGCTAAGCGCCTTTTGTCCGTAGCTAGTAATTTTCACGCCAATTGCACTTCTGATGAAGCTGCAAAGACTATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTTTTGAGCAAATTACCGTATGACCATTTGGACATATCAGAAGAAGTTAGAGAACAGGTGGATTTGGTGAGAACACAATTGAGTCGAGCCACTGAAAGATATGGATTTATGATCTCAAATATGTCATCATGTAACATATCCCAGCAACTGGCCGGAAACGTTTGTCAGGTTAGTGGCAAATCTAAGAATCAGCTGCACAAACAAAACAGCTGCCCTGAGTATTTATTAAAACTGGACAATGTTCCTAAAAGCAATGGAGGGAAAAGATGCAGCACATGTCAGGTAAGTCTTCACTTGGAAAGGGCAAGGAGCATCCCTGCCTCTACGATGGCTTCCTTATCAAATGTGATTCATTCTGAAAGTCAAGATTCGTCCGAGAAGGGCCTAACCAGAGTTAAAACACCAGGAGCTATTGTAATTCCTGAAGATTTTCTCTGCCCCATATCACTGGAATTAATGAGGGATCCTGTTATTGTGGCCACAGGCCAGACGTATGAGCGGTCTTACATACAGCGATGGATAGCAAGTGGAAATAAAACTTGCCCAAAAACTCGCCAGAAGTTGAAAAATTTGAACCTAACACCAAATTTTGTTTTAAGGAGCCTTATCAGTCAGTGGTGCATAGATAACAACTTTGAGCAGCCAAGAGGATTAACCCACGGCAAGCTAAAACTGAGTGATGGATCATTTAGAGATGTCACAGGTGACATGGCAACCATTGAGGCTCTGGCCTTGAAGTTGTCAAGCCATTCCATTGAGGACTGTAGAGCAGCTGTCACTGAAATCCGGTCACTTTCAAAACAAAGTACAGACAATAGAATACTAATTGCTGAAGCTGGAGCGATACCAGTTCTGGTTAACCTGTTAACATCAGAAGATGTATTGACACAAGAGAATGCAGTTACTTCAATTCTCAACCTCTCCATTTATGAAAACAACAAGGGACTTATAATGCTTGCTGGCGCCATCCCATCAATTGTGCAAGTTCTCAGAGTTGGAAGCATGGAAGCAAGAGAAAATGCTGCAGCAACCCTTTTTAGCTTATCTTTTCCGGATGAGAACAAAATAATAATTGGTTCTGCAGGAGCTTTCCCTCCTTTGATAGAATTGCTCCAAAATGGCAGCCCTAGAGGGAAGAAGGATGCAGCATCAGCGTTATTCTACTTATGTAATAATGAAGGGAACAAGGGTAAGGCCATTAGATCAGGGATCATCCCTGCATTGTTGAAGATGCTTTCAGATTCAAGAAAATCAATGGTTGATGAAGCCATAACAATAATGTCAGTTCTTGTTAGCCACCAAAGGGCAAAAGTTGCTATCGTAAACGCTGGCACCATTCCTGTTTTGATTGATCTTTTGAGTACAGGTCTGCCTCGACACAAAGAGTATGCGGCCGCCATTTTATTTTCCTTATGTAAGAGAGATGCTAATAATCTTGCTTGTTTAAGTACTCTTGGTGCTGTGATCCCATTGACTGAACTTTCTCTCAGTGGCACTGAGAGGGCTAAACGGAAGGCCACTTCACTATTGGAACATATTCGCAAGTCCCAGGAGCTTTGA 1941 0.4359 MAGDGDRTPELLGLIHDIAALYGGAASSAAIAGDSVFKKDCIDLVRRISLLSHLFEEIRDLKAVNSSSSSSSPNGFASSWSSDLVFAFQSAKRLLSVASNFHANCTSDEAAKTIVFQFQCVTWKLEKLLSKLPYDHLDISEEVREQVDLVRTQLSRATERYGFMISNMSSCNISQQLAGNVCQVSGKSKNQLHKQNSCPEYLLKLDNVPKSNGGKRCSTCQVSLHLERARSIPASTMASLSNVIHSESQDSSEKGLTRVKTPGAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIASGNKTCPKTRQKLKNLNLTPNFVLRSLISQWCIDNNFEQPRGLTHGKLKLSDGSFRDVTGDMATIEALALKLSSHSIEDCRAAVTEIRSLSKQSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSFPDENKIIIGSAGAFPPLIELLQNGSPRGKKDAASALFYLCNNEGNKGKAIRSGIIPALLKMLSDSRKSMVDEAITIMSVLVSHQRAKVAIVNAGTIPVLIDLLSTGLPRHKEYAAAILFSLCKRDANNLACLSTLGAVIPLTELSLSGTERAKRKATSLLEHIRKSQEL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0217 646 SMART arm_5 560 600 IPR000225 GO:0005515
Mibi12g0217 646 SMART arm_5 519 559 IPR000225 GO:0005515
Mibi12g0217 646 SMART arm_5 478 518 IPR000225 GO:0005515
Mibi12g0217 646 SMART arm_5 396 436 IPR000225 GO:0005515
Mibi12g0217 646 SMART arm_5 437 477 IPR000225 GO:0005515
Mibi12g0217 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515
Mibi12g0217 646 Pfam U-box domain 267 336 IPR003613 GO:0004842|GO:0016567
Mibi12g0217 646 CDD RING-Ubox_PUB 271 313 IPR045210 -
Mibi12g0217 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 448 490 IPR000225 GO:0005515
Mibi12g0217 646 Gene3D - 559 644 IPR011989 -
Mibi12g0217 646 SUPERFAMILY ARM repeat 366 640 IPR016024 -
Mibi12g0217 646 SUPERFAMILY RING/U-box 267 341 - -
Mibi12g0217 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 341 IPR013083 -
Mibi12g0217 646 Gene3D - 346 558 IPR011989 -
Mibi12g0217 646 PANTHER U BOX DOMAIN-CONTAINING 38 641 - -
Mibi12g0217 646 SMART Ubox_2 270 333 IPR003613 GO:0004842|GO:0016567
Mibi12g0217 646 Coils Coil 140 160 - -
Mibi12g0217 646 FunFam RING-type E3 ubiquitin transferase 266 340 - -
Mibi12g0217 646 FunFam RING-type E3 ubiquitin transferase 353 646 - -
Mibi12g0217 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 530 572 IPR000225 GO:0005515
Mibi12g0217 646 Pfam Armadillo/beta-catenin-like repeat 397 435 IPR000225 GO:0005515
Mibi12g0217 646 Pfam Armadillo/beta-catenin-like repeat 479 517 IPR000225 GO:0005515
Mibi12g0217 646 ProSiteProfiles U-box domain profile. 266 340 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0217 Mibi-ChrMibi12 4348616 4351892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0217 1 643 U-box Gene Family AT1G23030 56.636 0.0 665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0217 12 4348616 4351892 Mibi12g0217 12 4348616 4351892 ECH