Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0073 ATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCACAGAAGAAAACCCGATTCATCATCAGATGACACAACCACAACAACAACAGCATCATCAATCCTCCACAGCTGCTTCCTCGACTTCTCCAAACACACTTGTCCCTCAAAAGAAACGAAGGAATCAGCCTGGAACTCCAAATCCAGATGCGGAGGTGATAGCACTATCGCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAGAGAGAGCAGAACCTTCAACTTCACAGAAGAGGACACAACCTTCCATGGAAGCTGAAGCAAAAAACCAACAAAGAGCCAAAGAGGAAGGTTTATCTTTGTCCTGAACCAACTTGTGTGCACCATGACCCTTCTAGGGCCCTTGGTGACCTCACTGGTATTAAGAAGCACTATTCCAGAAAGCACGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCAAAGAAATACGCGGTTCAGTCTGATTGGAAGGCTCACTCTAAGACTTGTGGTACCAGAGAATACAGATGTGACTGTGGGACTCTCTTCTCCAGGCGTGACAGTTTCATAACACACAGAGCCTTCTGTGATGCCCTAGCGCAGGAAAGTGCAAGAAACCCTACAAACTTAAATCCATTGGCCACTACTCATAATCTTTATGGCTCAAATCATCACCATATGACCTTAGGCCTATCTCATCACCAACTTCCAAATGCTTCTTCAATGACCCACCACCATCTTCACCCTCATCATCAAAACCCTAATACCACCAGTCTCTTGCGTCTAGGAGGCAATAATATTAACGCCAATAATAACCACAATGCAGCGAAATTTGAGCCCACCACCTTACTCTCACCCTCATCCTCATCAAACCCTAATTCCTCATCACCTTTCTTCATCACAGATCCCATCTCTGACCAAGGATTCCACCATCACCAACAAGCTCAAGCATTTTCATCTTCAACCAATAAGGGTTCTTCTTTACATCATGGTCTCATGCAGCTTCCTGATCTTCAAGGTAACCCTAGTAACAACAATCTAGGGTTCTTCACTAATAACAGCAATATGATCACTTCTGATCATCACCATCAGCAGTTCAACAACCATATTGGTGGTTTGCCTTCATCAGTCCTCTTCAGTGCCAACTCTTCAATGCAACACCACCCCGATGATATCGTTTCTCCTCCGACGGCTGCGGCGCATATGTCTGCCACGGCATTGCTTCAGAAAGCTGCTCAAATGGGGTCCACCACGTCCACCACGCAGCCATCCAATAACAGTTCTTCCTCGTTACTACGAGGAATGGGTGGTGGTTCATCAACCAATAATGCTAATAAGTCGGATAATGTTGTCACTTTTGGAAGTGAGAGTACAGAAAATGAACAACAACAACAACATCATCATCATCTTAGAGGGTTGATGAATTCTCTTGCTAATGGGAATAGTTCCATGTTTGGAGGGAATGTGAATGAGCAGGCAAATAATGGCATGCAACAGAATAGTATGGGTGTTGTGAGCTTTGGAGGTTCGGATAAGTTAACGTTAGACTTTTTAGGTGTGGGAGGAATGGTGAGGAGCATGAATAATAATGGTGCCTTTTCATCACAGCAGAGAGAAGCTCATCATCATCATCAACAACAACAACAACATGGAAGCATGAACATGATGAGTTCTTTGGAAGTTCCTCCTGGACAACACCAAGGAAGCCAAAGTTTCAGAAGCACGACGTCGTTGCAATGA 1761 0.4469 MSAASSSSPFFGITEENPIHHQMTQPQQQQHHQSSTAASSTSPNTLVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPTNLNPLATTHNLYGSNHHHMTLGLSHHQLPNASSMTHHHLHPHHQNPNTTSLLRLGGNNINANNNHNAAKFEPTTLLSPSSSSNPNSSSPFFITDPISDQGFHHHQQAQAFSSSTNKGSSLHHGLMQLPDLQGNPSNNNLGFFTNNSNMITSDHHHQQFNNHIGGLPSSVLFSANSSMQHHPDDIVSPPTAAAHMSATALLQKAAQMGSTTSTTQPSNNSSSSLLRGMGGGSSTNNANKSDNVVTFGSESTENEQQQQHHHHLRGLMNSLANGNSSMFGGNVNEQANNGMQQNSMGVVSFGGSDKLTLDFLGVGGMVRSMNNNGAFSSQQREAHHHHQQQQQHGSMNMMSSLEVPPGQHQGSQSFRSTTSLQ 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0073 586 FunFam protein indeterminate-domain 12-like 58 126 - -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 535 586 - -
Mibi12g0073 586 Gene3D Classic Zinc Finger 133 212 - -
Mibi12g0073 586 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 1 64 - -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 416 502 - -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 286 336 - -
Mibi12g0073 586 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 1 56 - -
Mibi12g0073 586 SMART c2h2final6 155 175 IPR013087 -
Mibi12g0073 586 SMART c2h2final6 120 150 IPR013087 -
Mibi12g0073 586 SMART c2h2final6 79 101 IPR013087 -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 554 586 - -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 416 467 - -
Mibi12g0073 586 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 552 IPR031140 -
Mibi12g0073 586 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Mibi12g0073 586 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 482 502 - -
Mibi12g0073 586 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Mibi12g0073 586 MobiDBLite consensus disorder prediction 286 352 - -
Mibi12g0073 586 Gene3D Classic Zinc Finger 58 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0073 Mibi-ChrMibi12 1276459 1281013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0073 74 535 C2H2 Transcription Factor Family AT2G02080 49.471 5.46e-125 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi12g0073 zf-C2H2_jaz 3.6e-05 CL0361