Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0052 ATGGAGAACCTCCCACTTCAGATTTTTCCCTACCACGTTCTCCCAATTGTCTTTCTCATCGCTTCTCTTTTTTTCCCGCTCACTCATCAACTTACAGCTTCATCATCCCTTAAGACTGATGCACAGGCTCTTCTCATGTTCAAGAAGACGATCCAGAAGGACCCTGATAGAGTCTTGTCCACATGGCAACCCACCAGAGATCCTTGTACCTGGTATGGAGTTTCCTGCACAGCAAGACGTGTCACTCAGCTTGATCTAAGTGATAAGAATCTGGTTGGGAATTCTTTCAGTGCCTTGTCTTCTTTAGATATGTTGTCTGTTCTGAATTTGCATTTGAACTCTTTCCCTGTAAATTCCACTTCTTTGCTTGACCTTCCTTATAGCTTGACACAGCTTGATCTGTCCTTCACTGGAGTTTCTGGTTCTCTTCCTGAGAATTTTTTCTCCAAGTGTCCTAATCTCGTCGTTGTCAATCTTTCTTACAACAACTTAACAGGTCCTGTGCCTGAAAATTTCCTGCAGAATTCTGATAAGCTCCAGTCTCTTGATATTTCTTCAAACAATTTGACAGGGTCCATATCAAACTTGAAAATTGAGTGTAATTCCTTGTTGTTTCTTGATCTTTCTGGAAACCATTTATCAGATTCGATCCCGTTTTCCTTGTCAAACTGTACCAGCCTTAAGAATTTGAATTTAGCACACAATCTGATATCAGGGGAAATTCCAAAATCTCTGGGACAGCTTTCTGAGGTAGAGACAATTGATCTTTCTTACAATCAGATCACTGGTTGGATTCCTTTTGAGTTGGGAAATATGTGTGCTAGCCTTAAAGATCTAAGATTTTCTTTCAACAACATTTCGGGTACTATCCCACCAACTATGTCTTCTTGCTCTAGCCTGCAGTATCTTGACATATCTAACAACAATATGTCAGGGCCATTACCAGATAAAATCTTTCAGAACCTGCAATCTATTCAGGAAGTGCATTTGGGAAACAATGCTATCTCAGGACCATTTCCTTCTTCGATATCATCATGCAAAAATTTGAGGATCCTGGACTTGAGCTCCAACAAAATCTCAGGATTCATTCCTCGAGATATATGTCCAGGGGCAGCATCACTTGAGCAGATTAGAATTCCAGATAACCTCATCACAGGAGAAATTCCCGCTGAGCTGTCAAAATGTTCACAGTTGAAGACAATTGATTTTAGTCTAAATTATCTCAATGGTTCAATCCCTCCAGAGCTTGGACAGCTTGAGAATCTTCAGCAGTTGATAGCATGGTTCAATGGGTTGGAAGGAAAAATCCCATCAGAATTAGGTAAATGCAAAAGTCTAAAAGATCTGATACTGAATAATAATCAGCTGAGTGGTGAGATTCCTGTTGAGTTGTTCAATTGCAGCAATCTTGAATGGATTTCACTGACAAGCAATGGACTCACTGGTCAAATACCGCGGGAATTCGGCCAGTTGACTCGGTTAGCAGTTTTGCAACTCGGAAACAACAGCTTGACAGGCGAGATACCAGGAGAGCTAGCAAATTGCAGCAGTTTGGTGTGGCTGGACTTAAACAGTAACAAGCTCACTGGAGAGATCCCACCAAGACTTGGCAGGCAGCTTGGAGCAAAATCATTGTTTGGGATTCTTTCAGGTAACACATTAGTGTTTGTAAGAAATGTGGGGAACTCTTGTAAAGGGGTTGGTGGGCTCCTAGAGTTTTCTGGAATCAGACCAGAAAGACTTCAGCAGGTGCCAACATTGAGGACCTGTGATTTCACCAGATTGTATTCTGGTGCAGTTCTGAGTTATTTTACCAAGTACCAGACTCTGGAGTATTTAGATCTTTCATACAATGAGCTTCGTGGAAGAATCCCGGAAGAATTTGGAGACATGGTGGCCTTGCAGGTTCTTGAATTGTCTCACAACCAGTTATCAGGAGAGATCCCCTCATCACTTGGCCAGCTTAAGAACTTGGGTGTCTTTGATGCATCACATAACAGGCTGCAAGGTCATATCCCAGACTCATTCTCAAACCTGTCATTTCTGGTGCAGATTGATCTGTCTAATAATGAGTTAACCGGGCAAATTCCGTCTAGAGGACAACTAAGTACACTTCCAGCCAGCCAATATGCGAACAACCCGGGACTTTGTGGTGTTCCACTGGCTGAATGTCAGAGTGGTAACAGCCAACCAACAGCAAATCCAAGCACAGATGACAGCAAAGGAAGCCATAAGGGAGCAGCTAGATCATGGGCAAATAGCATTGTCATGGGAGTTCTTATTTCCATCGCTTTTGTGTGCATCTTGATAGTGTGGGCACTTGCAATGCGTGTGAGGAGGAGGGAGGCCGAGGAAGTTAAAATGCTTAACAGCTTGAAAGCATCTCATGCTGCCACAACGTGGAAAATTGACAAGGAGAAAGAACCCTTGAGCATTAATGTGGCAACATTTCAAAGGCAGCTGAGAAAGCTCAAGTTCTCTCAATTGATTGAAGCAACTAATGGCTTCTCAGCAGCAAGCCTCATTGGATGTGGTGGGTTTGGAGAAGTGTTCAGGGCCACACTAAAGGATGGCTCAAGTGTTGCAATCAAAAAGCTCATCCGTTTGAGCTGCCAAGGTGATCGAGAATTCATGGCAGAGATGGAAACCTTGGGGAAGATCAAGCATAGGAATCTTGTGCCATTATTGGGATACTGTAAAGTTGGTGAAGAGAGACTGCTTGTTTATGAGTTCATGGAGTATGGAAGCCTTGAAGAAATGCTTCATGGGAGAACAAAGACACGAGATAGACGAATTCTAACATGGGAAGAAAGGAAGAAGATTGCAAGAGGTGCTGCAAAAGGAATTTGTTTCCTACACCACAATTGCATCCCACACATCATACACAGAGACATGAAATCAAGCAATGTACTGCTTGACCATGAAATGGAGGCCAGGGTTTCAGACTTTGGAATGGCAAGACTAATAAGTGCACTCGACACTCATCTAAGTGTTAGCACACTAGCAGGAACACCCGGATATGTTCCACCAGAGTACTACCAAAGTTTCCGTTGCACTGCAAAGGGTGATGTCTACTCATTTGGAGTTGTCATGCTGGAGCTTCTTTCGGGGAAACGCCCCACCGATAAGGAGGACTTTGGTGACACTAATTTGGTGGGATGGGCTAAAATGAAGGTACGTGAAGGGAAGCAGAGGGAAGTAATAGATCCTGAGTTACTTTCGGTGACTAAAGGAACCGATGAAGCAGAAGTTAAAGAGGTGAAAGAGATGATAAGGTATTTAGAGATCACATTACAATGTGTTGATGACCTTGCTTCCAAGAGGCCAAACATGTTGCAGGTGGTGGCCATGCTGAGAGAGTTAATGCCTGGATCAGCAGATGGAAGCAGCAACAGTGCTTGA 3402 0.4324 MENLPLQIFPYHVLPIVFLIASLFFPLTHQLTASSSLKTDAQALLMFKKTIQKDPDRVLSTWQPTRDPCTWYGVSCTARRVTQLDLSDKNLVGNSFSALSSLDMLSVLNLHLNSFPVNSTSLLDLPYSLTQLDLSFTGVSGSLPENFFSKCPNLVVVNLSYNNLTGPVPENFLQNSDKLQSLDISSNNLTGSISNLKIECNSLLFLDLSGNHLSDSIPFSLSNCTSLKNLNLAHNLISGEIPKSLGQLSEVETIDLSYNQITGWIPFELGNMCASLKDLRFSFNNISGTIPPTMSSCSSLQYLDISNNNMSGPLPDKIFQNLQSIQEVHLGNNAISGPFPSSISSCKNLRILDLSSNKISGFIPRDICPGAASLEQIRIPDNLITGEIPAELSKCSQLKTIDFSLNYLNGSIPPELGQLENLQQLIAWFNGLEGKIPSELGKCKSLKDLILNNNQLSGEIPVELFNCSNLEWISLTSNGLTGQIPREFGQLTRLAVLQLGNNSLTGEIPGELANCSSLVWLDLNSNKLTGEIPPRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLQQVPTLRTCDFTRLYSGAVLSYFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLAECQSGNSQPTANPSTDDSKGSHKGAARSWANSIVMGVLISIAFVCILIVWALAMRVRRREAEEVKMLNSLKASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFRATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEFMEYGSLEEMLHGRTKTRDRRILTWEERKKIARGAAKGICFLHHNCIPHIIHRDMKSSNVLLDHEMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQREVIDPELLSVTKGTDEAEVKEVKEMIRYLEITLQCVDDLASKRPNMLQVVAMLRELMPGSADGSSNSA 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0052 1133 SUPERFAMILY RNI-like 217 535 - -
Mibi12g0052 1133 Pfam Brassinosteroid receptor island domain 546 604 IPR045381 -
Mibi12g0052 1133 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Mibi12g0052 1133 FunFam serine/threonine-protein kinase BRI1-like 2 39 149 - -
Mibi12g0052 1133 SMART LRR_sd22_2 655 681 - -
Mibi12g0052 1133 SMART LRR_sd22_2 176 198 - -
Mibi12g0052 1133 SMART LRR_sd22_2 248 269 - -
Mibi12g0052 1133 SMART LRR_sd22_2 297 324 - -
Mibi12g0052 1133 SMART LRR_sd22_2 346 361 - -
Mibi12g0052 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 960 972 IPR008271 GO:0004672|GO:0006468
Mibi12g0052 1133 Gene3D Ribonuclease Inhibitor 170 724 IPR032675 -
Mibi12g0052 1133 Gene3D Phosphorylase Kinase; domain 1 795 911 - -
Mibi12g0052 1133 Pfam Protein tyrosine and serine/threonine kinase 840 1117 IPR001245 GO:0004672|GO:0006468
Mibi12g0052 1133 SUPERFAMILY L domain-like 573 722 - -
Mibi12g0052 1133 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 570 728 - -
Mibi12g0052 1133 Pfam Leucine rich repeat 206 261 IPR001611 GO:0005515
Mibi12g0052 1133 Pfam Leucine rich repeat 314 359 IPR001611 GO:0005515
Mibi12g0052 1133 Pfam Leucine rich repeat 468 528 IPR001611 GO:0005515
Mibi12g0052 1133 Pfam Leucine rich repeat 603 644 IPR001611 GO:0005515
Mibi12g0052 1133 Pfam Leucine rich repeat 128 189 IPR001611 GO:0005515
Mibi12g0052 1133 SUPERFAMILY L domain-like 38 315 - -
Mibi12g0052 1133 ProSitePatterns Protein kinases ATP-binding region signature. 842 865 IPR017441 GO:0005524
Mibi12g0052 1133 ProSiteProfiles Protein kinase domain profile. 836 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g0052 1133 Gene3D - 549 605 - -
Mibi12g0052 1133 SUPERFAMILY Protein kinase-like (PK-like) 817 1118 IPR011009 -
Mibi12g0052 1133 CDD STKc_IRAK 842 1121 - -
Mibi12g0052 1133 FunFam serine/threonine-protein kinase BRI1-like 2 797 911 - -
Mibi12g0052 1133 ProSiteProfiles Leucine-rich repeat profile. 348 369 IPR001611 GO:0005515
Mibi12g0052 1133 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 368 555 - -
Mibi12g0052 1133 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 274 1120 - -
Mibi12g0052 1133 FunFam serine/threonine-protein kinase BRI1-like 2 912 1129 - -
Mibi12g0052 1133 SMART serkin_6 836 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi12g0052 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 272 - -
Mibi12g0052 1133 Gene3D Ribonuclease Inhibitor 39 147 IPR032675 -
Mibi12g0052 1133 Gene3D Transferase(Phosphotransferase) domain 1 912 1129 - -
Mibi12g0052 1133 Pfam Leucine Rich repeat 296 312 IPR001611 GO:0005515
Mibi12g0052 1133 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Mibi12g0052 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 273 363 - -
Mibi12g0052 1133 SMART LRR_typ_2 248 271 IPR003591 -
Mibi12g0052 1133 SMART LRR_typ_2 491 515 IPR003591 -
Mibi12g0052 1133 SMART LRR_typ_2 516 539 IPR003591 -
Mibi12g0052 1133 SMART LRR_typ_2 297 321 IPR003591 -
Mibi12g0052 1133 SMART LRR_typ_2 346 370 IPR003591 -
Mibi12g0052 1133 SMART LRR_typ_2 443 467 IPR003591 -
Mibi12g0052 1133 SMART LRR_typ_2 631 655 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0052 Mibi-ChrMibi12 1056413 1059814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0052 13 1121 Receptor kinase-like Gene Family AT1G55610 47.958 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Mibi12g0052 PK_Tyr_Ser-Thr 7.4e-43 CL0016