Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0043 ATGGCTGCATCTTCATCGGCAGCGGCGTCGCTGTTTGGAATGAGAGGAGATCAGAATCCCTTGAATCAGCAGCAGCATTCATCCTCTACTCCATCTTCTTCAGCCACTGCTCCTCCACCTCCCCCAAAGAAGAAGAGAAACCAACCTGGAAACCCAAATCCAGATGCGGAGGTGATAGCTCTATCACCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTTCAGCTTCACAGAAGAGGACACAACCTTCCATGGAAGCTGAAGCAAAAAACCAACAAAGAGCCAAAGAGGAAGGTTTATCTTTGTCCTGAACCAACTTGTGTGCACCATGACCCTTCTAGGGCCCTTGGTGACCTCACTGGTATTAAGAAGCACTATTCCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGTTCAAAGAAATACGCGGTTCAGTCTGATTGGAAGGCTCATTCTAAGACTTGTGGTACCAGAGAATACAGATGTGACTGTGGAACTCTCTTCTCCAGGCGAGACAGTTTCATCACCCACAGGGCGTTTTGTGATGCACTGGCTCAAGAAAGTGCTAGACAACCTTCCAGTTTGATCAATGGTGGCCAGCTCTTTGGAAATAATGACAATGTGGCTTTAGGCTTATCTCAGGTGGCCTCCCACCTCTCCGCCGCCGTCCACGACCACCAGCCCGGCACCGACATCCTGCGAGCCGCCGCAGCCGCCCGGGCCGGCCACTTCGACCACCTCCTCCCGCCATCCCTAATCCGACCACCTCCACCACCACAGCAGATGGCGGCGGCGGCCAACATCGCCTCTCCCCCCGCCGCCACCTCCTTCTTCATGTCTGAACAATCAAACCAAAACTACCACCACCATCAAAACAAGCATCAATTCCATGGGCTCATGCAATTCTCTGATCTCCACCACCACCACCACAACAACAACAGCAACAACTCTCCAACTTCTGCACCTAACATCTTCAACCTCCCTCCATTCCTCTCCGACCACCTCGGAAACAACGGCACCGCCTCTTCCGGAGGAGGAGGACACGTGGACGGCCACAACAACAACAACAACTTCTTCAGCGACCATATAACAAGCTCAAGTGCTCCTTCTCTTTTCAGCACATCTCATGTTCACAGCAGCAACAGTATCCCTCACATGTCTGCAACTGCACTTCTCCAAAAGGCTGCGCAAATCGGTGCAACTACAAGCAACAACAGCACCACCGCGTCGCTCCTCCGTAGCTTTGGAAGCTCCTCCTCCACCACCACAGGCTCCAAGCAGCCGCCGCCACATCAGCTGGTAGGAGCAAACTACGGCGGCGCTATGTTCGCGGGGTCGACGAGCAACAACGAGGACGATGAGAACAGTAATCTTCAAGACTTGATGAACTCGTTCACTAGTTCTGTTGGTGGGTATGAAGGGTATGATCATCAGAACAAGTCATCGGGCACGACGAGGGAGATGAAACTTGCGGCGGGATCAGACAGGTTGACGAGGGATTTTCTTGGGGTTGGGCAGATTGTGAGGAGCATAAGTGGTGGTGGAGGAATGTCACCAGGAGCTCCTCATCATCATCAGCAAGAAGGCCGGTTCATGATGGACTTGACTTCTTTGGAGGCTCATCACAGGAATAATGGTGGTGGTAATAATAACAATGCTCCGGCGCCGTCAGGACAATCTTTTGGTGGTGGAGGGAATTTTCATGTCAAGGGATGGATCGATGTCATGACGAGGTTCTGTTATACTGAAGGTTGA 1800 0.5172 MAASSSAAASLFGMRGDQNPLNQQQHSSSTPSSSATAPPPPPKKKRNQPGNPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSSLINGGQLFGNNDNVALGLSQVASHLSAAVHDHQPGTDILRAAAAARAGHFDHLLPPSLIRPPPPPQQMAAAANIASPPAATSFFMSEQSNQNYHHHQNKHQFHGLMQFSDLHHHHHNNNSNNSPTSAPNIFNLPPFLSDHLGNNGTASSGGGGHVDGHNNNNNFFSDHITSSSAPSLFSTSHVHSSNSIPHMSATALLQKAAQIGATTSNNSTTASLLRSFGSSSSTTTGSKQPPPHQLVGANYGGAMFAGSTSNNEDDENSNLQDLMNSFTSSVGGYEGYDHQNKSSGTTREMKLAAGSDRLTRDFLGVGQIVRSISGGGGMSPGAPHHHQQEGRFMMDLTSLEAHHRNNGGGNNNNAPAPSGQSFGGGGNFHVKGWIDVMTRFCYTEG 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0043 599 MobiDBLite consensus disorder prediction 426 447 - -
Mibi12g0043 599 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Mibi12g0043 599 MobiDBLite consensus disorder prediction 426 445 - -
Mibi12g0043 599 MobiDBLite consensus disorder prediction 327 341 - -
Mibi12g0043 599 MobiDBLite consensus disorder prediction 1 57 - -
Mibi12g0043 599 MobiDBLite consensus disorder prediction 555 577 - -
Mibi12g0043 599 MobiDBLite consensus disorder prediction 321 343 - -
Mibi12g0043 599 Gene3D Classic Zinc Finger 126 205 - -
Mibi12g0043 599 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Mibi12g0043 599 FunFam protein indeterminate-domain 12-like 51 119 - -
Mibi12g0043 599 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Mibi12g0043 599 Gene3D Classic Zinc Finger 53 120 - -
Mibi12g0043 599 MobiDBLite consensus disorder prediction 34 48 - -
Mibi12g0043 599 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Mibi12g0043 599 SMART c2h2final6 148 168 IPR013087 -
Mibi12g0043 599 SMART c2h2final6 72 94 IPR013087 -
Mibi12g0043 599 SMART c2h2final6 113 143 IPR013087 -
Mibi12g0043 599 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Mibi12g0043 599 MobiDBLite consensus disorder prediction 557 574 - -
Mibi12g0043 599 MobiDBLite consensus disorder prediction 16 33 - -
Mibi12g0043 599 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 538 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0043 Mibi-ChrMibi12 891860 896719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0043 43 532 IDZ Gene Family AT2G02070 51.337 2.96e-141 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi12g0043 zf-C2H2_jaz 3.7e-05 CL0361