Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0013 ATGAAGTGCGTCATGAAGAAGATGAACTCATCATCATCAACCATGGCAATGGAGCCTCTTGTGAAAATTAAAAGCAAGGATCCCATATGGGATGAAGAATGCCAACACTGGCACCTCAACTTCAGACATCATAGTACTTTGGCATCTGATAATTTCCAGCTTGTTTCTGATGAAAATGACGATTATGATGAACAAGCACAAGAAAAAGTAAAACTGGAAATTGCTAAGAAAGAAGAAGACGTGTTTGTTATGGATTACTGTTATCCACTCTCTGCATTTCAAGCCTTCGTCATCTGTCTCAGCAACTTTAGACTACCCACCGACAACAACCACGCAGTGCTGAAAAAGGTGGACGGCGTCAAAAAATTTTAG 372 0.4032 MKCVMKKMNSSSSTMAMEPLVKIKSKDPIWDEECQHWHLNFRHHSTLASDNFQLVSDENDDYDEQAQEKVKLEIAKKEEDVFVMDYCYPLSAFQAFVICLSNFRLPTDNNHAVLKKVDGVKKF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0013 123 Pfam Tub family 10 103 IPR000007 -
Mibi12g0013 123 Gene3D Tubby Protein; Chain A 1 105 IPR025659 -
Mibi12g0013 123 PANTHER TUBBY-RELATED 6 103 - -
Mibi12g0013 123 PRINTS Tubby superfamily signature 88 110 IPR000007 -
Mibi12g0013 123 PRINTS Tubby superfamily signature 23 40 IPR000007 -
Mibi12g0013 123 PRINTS Tubby superfamily signature 67 86 IPR000007 -
Mibi12g0013 123 SUPERFAMILY Tubby C-terminal domain-like 1 104 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0013 Mibi-ChrMibi12 340179 340550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0013 9 103 TUB Transcription Factor Family AT1G47270 45.545 3.98e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi12g0013 Tub 3.8e-27 CL0395