Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0010 ATGAATACTCTTCCACTAAACCCTCTGCAAGCTCTTGTTCAAACCTTCGCTTTTCAAAACCCTAGAACTCAACACGCGTTGGGTTTTGTTCGCCACTTCTCTATCCCCTCTAGCCTCCGAAGCTCCTTTGGTTTTATCTTTTGCGTCTCGAAGATGGGCAAATCCAGCAAGAAATCAGCTCCCAAAGTTGATTCGGCTCCGGCTGTTGTTCCGTCTTCCAAGTCTGCAAAGAAAGTCAAGAGAGAAGCTGAGGATGAACTTGAGAAGCAAGTGAGTGCAAAGAGGCAGAAAAGAGATGAAGTTGCTGAGAAGAAGGCCAAGGTGCAGAAAAGCAAGAAAGAAAGCAGTTCAGAGGATTCTTCCTCAGATTCTGAGGACGACAAGAAAACTGCAAAAAAGGCTGTTCTACCATCAAAGACACAACCTTCAAAGAACGGCACTCTAAGTGGTCGGGTGAACAAAGGCAAGCCAGCTAGTAGTTCCTCTTCTGATTCCTCTGATGAGGACTCCGATAGTGATGATGCTGGAAAATCCAAGGTGGCCACTGCTGCTGGTAAGAATGGAACTCTTTCAACAAAGAAGAAAGTCGAGCCAAGTGTCAGCTCAGATGAAGATAGCAGTTCAGATGAAGAAAATGTTGTGAGAACTAAAGTCGCCCCCTTATCCAAGAAGGTGCCTGTTGCCGCACCTAAGAAAGTTGAATCAGACTCAGAAACTGACAGCAGCTCTGATGAGGATGATGTCCCTACCAAATCATCCAAGAAGTTGCCTGCTGCAGGTAAAAGTGCTCCTGCCAAAAAGATAGAGTCGAGTGATGACACAACCTCTGATAGTAGCTCGGATGAAGATGATGATCTAGAAGTAAAGATACCTCCTGTATCAAAGAGGCCTGCAACAGCAGTTCCTTCAAAGAAGAAAGTTGAAAGCAGTGAAAGCTCCGAAGATGAATCAAGTGAAAGCTCTGATGAAGACAATGGCTTGAAGTCTTCTGTTAAAGTAGTTTCCAAGCCTTCCATTGGCTTGAAGTCTTCTGTTAAAGTAGTTTCCAAGCCTTCCATTGCTCTAAAGAAGGTTGAATCGAGTGGGAGTTCAGATTCTGATAGCAGCTCTGATGAGGACAGCAAAAATAAAAAGGGAGCCAATAAGGGTTCCAGTATCAAGCCAGCAAAGGCTTCGGAGAAAAATTCTAAGCTAGAGGATAGTTCTGACAAGACTGATTCTGATGATGAGGAGGAATCATCTGACAGTGATTCTGAGGATGAGAAGAAAACTGCTCCTAAGGCTAATGCTAAAGCAGCAGCTGCTGTGAGGACAGCTAAAGAGGAGTCTAGTGGAAGTTCATCTGAAGATGATTCTTCAGAGGATGAGAAAACTGCTCGCCAGGCTAACGTTAAAGCATCTGCTGGTGTGAAGGCAGTTAAAAAGAAGTCTAGTGAAAGTTCATCTGAAGATGACTCTTCGGAAGATGAGGATAAGATGGACGTTGATGAGGACAGTAGTTCCGAAGAAAGTGAGGAGGAGCCGCAAAAGAAAAAGCCTGTAAAAGTTAAGGAAAGCAGTGATGGTTCAGAGAGCTCAGATGATAGTGAAGATGATAACGAGACACCCTTCAAGACCAAGAAAAATGCTAGGGATGTGGAGATGGTTGAAGCTGCATCAGCAAAGTCAAATGGAAAGAAAGCTCCTAGCACCCCAGCTACTCCTAAAGTACAGGATGGCAGATCAAAGACTCTTTTTGTTGGAAATTTGTCATTTAAAGTAGAAGAGAATGATGTGAAAAACTTCTTTAAAGATTGTGGAGAAGTGGTTGAAGTCCGTTTAGCTGCTGATGACACTGGGAGATTTAAAGGCTTTGGGCATGTTGAATTTGCCACAGAAGAAGCAGCACAAAATGCCCTTGAGTTGAATGGGGAAGATTTGCTTGAGCGTCCTGTCAGACTTGATCTAGCTCGTGAAAGGGGAGCATATACCCCCACTAGCGGCAACTGGAGCAATTCATTCCAGAAAGGAGGACAGGCTCAAGCTCACACAGTATTTGTTAAGGGTTTTGATACATCCCAGGGGGAAGATGAGATTAGATCGAACTTGATAGAGCATTTCAGTTGTGGAGAGATTTCAAGGATATCAATACCTAAAGATTATGAGACTGGCGCTGTCAAGGGGATTGCCTACATGGATTTCAAGGATGCTAATGCGTTCAACAAAGCACTAGAATTGAATGGAAGTGAGCTTGGAGGTGGATATTATCTGACAGTTGATGAGGCAAGACCTCGAGGTGATAATCAAGGTGCAAGTGGTGGTAGAGGTGGTGGAAGGAGTGGTGGTGGTCAGTTTGGGGGACGAGGTGGCAGAGGTGGTGGTGGTCAATTTGGGGGAAGAGGTGGCAGAGGTGGCCGTGGAAGAGGTGGCAGAGGTGGCCGTGGCACACCCAATAAACCAAGCCTGGCAGCTCCAGGCACAGGCACGAAGACCACATTCGCGGATTAA 2487 0.4528 MNTLPLNPLQALVQTFAFQNPRTQHALGFVRHFSIPSSLRSSFGFIFCVSKMGKSSKKSAPKVDSAPAVVPSSKSAKKVKREAEDELEKQVSAKRQKRDEVAEKKAKVQKSKKESSSEDSSSDSEDDKKTAKKAVLPSKTQPSKNGTLSGRVNKGKPASSSSSDSSDEDSDSDDAGKSKVATAAGKNGTLSTKKKVEPSVSSDEDSSSDEENVVRTKVAPLSKKVPVAAPKKVESDSETDSSSDEDDVPTKSSKKLPAAGKSAPAKKIESSDDTTSDSSSDEDDDLEVKIPPVSKRPATAVPSKKKVESSESSEDESSESSDEDNGLKSSVKVVSKPSIGLKSSVKVVSKPSIALKKVESSGSSDSDSSSDEDSKNKKGANKGSSIKPAKASEKNSKLEDSSDKTDSDDEEESSDSDSEDEKKTAPKANAKAAAAVRTAKEESSGSSSEDDSSEDEKTARQANVKASAGVKAVKKKSSESSSEDDSSEDEDKMDVDEDSSSEESEEEPQKKKPVKVKESSDGSESSDDSEDDNETPFKTKKNARDVEMVEAASAKSNGKKAPSTPATPKVQDGRSKTLFVGNLSFKVEENDVKNFFKDCGEVVEVRLAADDTGRFKGFGHVEFATEEAAQNALELNGEDLLERPVRLDLARERGAYTPTSGNWSNSFQKGGQAQAHTVFVKGFDTSQGEDEIRSNLIEHFSCGEISRISIPKDYETGAVKGIAYMDFKDANAFNKALELNGSELGGGYYLTVDEARPRGDNQGASGGRGGGRSGGGQFGGRGGRGGGGQFGGRGGRGGRGRGGRGGRGTPNKPSLAAPGTGTKTTFAD 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0010 828 Gene3D - 538 671 IPR012677 -
Mibi12g0010 828 CDD RRM1_NUCLs 577 653 IPR034349 -
Mibi12g0010 828 Gene3D - 672 789 IPR012677 -
Mibi12g0010 828 SMART rrm1_1 677 753 IPR000504 GO:0003723
Mibi12g0010 828 SMART rrm1_1 577 648 IPR000504 GO:0003723
Mibi12g0010 828 FunFam Nucleolin 2 661 809 - -
Mibi12g0010 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 576 652 IPR000504 GO:0003723
Mibi12g0010 828 FunFam Nucleolin 2 550 660 - -
Mibi12g0010 828 Coils Coil 76 114 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 443 461 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 56 573 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 197 212 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 532 548 - -
Mibi12g0010 828 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 695 800 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 483 503 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 136 165 - -
Mibi12g0010 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 578 645 IPR000504 GO:0003723
Mibi12g0010 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 678 746 IPR000504 GO:0003723
Mibi12g0010 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 676 757 IPR000504 GO:0003723
Mibi12g0010 828 SUPERFAMILY RNA-binding domain, RBD 671 788 IPR035979 GO:0003676
Mibi12g0010 828 MobiDBLite consensus disorder prediction 75 134 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 557 571 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 229 252 - -
Mibi12g0010 828 MobiDBLite consensus disorder prediction 504 523 - -
Mibi12g0010 828 SUPERFAMILY RNA-binding domain, RBD 566 667 IPR035979 GO:0003676
Mibi12g0010 828 MobiDBLite consensus disorder prediction 755 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0010 Mibi-ChrMibi12 281349 289905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0010 568 744 Eukaryotic Initiation Factors Gene Family AT4G34110 28.729 1.85e-10 62.4