Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0007 ATGGGTAGAGGGAAGATAGAGATAAAGAGGATCCAGAACACGACCACCAGGCAGGTGACATTCTCAAAACGCAGAGCTGGGCTTGTGAAGAAGACGCATGAGCTTTCTGTGCTCTGCGACGCCCACATTGGCCTCATCATCTTCTCCTCCACCGGCAAGTTGTTCCAGTACTCTTCCCATCCTTTCAGGATGGAGCAGATCATTGAAAGATACCAGAAAGCTACAGGAGTACGCATACCTGAACATGATAGCCGGGAGAGTGTGAGGCTGGAATTGGGAATTCAGAGGTATATTGGAGAGAGCACGGGAAGCTTACAGTATGAGGAACTCACTAAACTTGAACATGACCTTGAGATGTCTGTCACCAAAGTCCGAAATCGCAAGAATGATCTGTTGCAGCAACAGCTGGATAATCTGCTGAGAAAGGAACGAATGATGGAAGAAGAGAACAGCTATCTGGCGCATTGGAAGATTGAGGAGCAGCAGCGAGGAGGAGGAGGAGGAATGATGATGGAGAATAATCATAATAATGAGCAAATGGTGGAGGAGCAGATGGCATTCTATAATAATAACAATGGGCACCATCATCATCAACAACAGCATCTTGAGGCAGCAAATGGTGGTGAAACATGTCTTCAGCTCCACCACCTTCATCCCTATCTCCAGCTCGCCCAGCCCAACAACATTCACCCTTCTCCCCCCACTTCCACTTCTACCCTCCTCCCCCATTAA 732 0.4809 MGRGKIEIKRIQNTTTRQVTFSKRRAGLVKKTHELSVLCDAHIGLIIFSSTGKLFQYSSHPFRMEQIIERYQKATGVRIPEHDSRESVRLELGIQRYIGESTGSLQYEELTKLEHDLEMSVTKVRNRKNDLLQQQLDNLLRKERMMEEENSYLAHWKIEEQQRGGGGGMMMENNHNNEQMVEEQMAFYNNNNGHHHHQQQHLEAANGGETCLQLHHLHPYLQLAQPNNIHPSPPTSTSTLLPH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0007 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi12g0007 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi12g0007 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi12g0007 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Mibi12g0007 243 MobiDBLite consensus disorder prediction 224 243 - -
Mibi12g0007 243 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Mibi12g0007 243 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Mibi12g0007 243 ProSiteProfiles K-box domain profile. 73 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi12g0007 243 Coils Coil 129 149 - -
Mibi12g0007 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi12g0007 243 Pfam K-box region 89 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi12g0007 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi12g0007 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi12g0007 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mibi12g0007 243 MobiDBLite consensus disorder prediction 225 243 - -
Mibi12g0007 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0007 Mibi-ChrMibi12 204291 206731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g0007 1 156 MADS-box Gene Family AT5G23260 53.846 1.55e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi12g0007 K-box 1.6e-15 No_clan