Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1911 ATGAGGCCCGTCTTTTGTGGAAATCTGGATTTCGATGCCCGCCAGTCTGATGTTGAGAGACTGTTCAGAAGATATGGAAAAGTTGACAGGGTGGACTTGAAGTCTGGGTTTGCTTTTGTGTACATGGAAGATGAGCGTGATGCTGAGTATGCAATCAGAAGACTTGATAGAACTGAGTTTGGTAGAAAGGGGCGCCGAATACGCGTTGAGTGGACTAAGCAAGAACGTGATAGCAGGAGGTCAGGTGATTCAAGAAGATCTTCAACTAATATGAAACCATCAAAGACTTTGTTTGTCATAAATTTTGATCCTGTTCATACCAGGACAAGGGATCTGGAGAGGCACTTTGATCCCTATGGGAAAATATTGAATATAAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCCAGTAGAGCATTGGAGGCAACTAACATGAGCAAGTTATTGGATCGGGTTATAACAGTAGAGTATGCAATAAGAGATGATGATGATGATAAGAGAAATGGATACAGTCCTGATAGAAGAGGCCGTGACATATCCCCTGATGGGAGATATGGTCGTGGTAGATCACTTAGCCCTTATCGTAGGGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCGACTTCCAGACTAGAACCAAGAGGAAGCCCCAAGTATGAACGGAATGAAAGCCCGTCAAATGGAAGATATGACAGCCGATCACCACCACCCCGCCGAGTGTCCCGTTCCCCAGGAGAAGTTGAATAG 771 0.4501 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRRSSTNMKPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFVQYESLEDASRALEATNMSKLLDRVITVEYAIRDDDDDKRNGYSPDRRGRDISPDGRYGRGRSLSPYRRGRGSPDYGHGSNPTSRLEPRGSPKYERNESPSNGRYDSRSPPPRRVSRSPGEVE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1911 256 SUPERFAMILY RNA-binding domain, RBD 4 88 IPR035979 GO:0003676
Mibi11g1911 256 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mibi11g1911 256 SMART rrm1_1 96 162 IPR000504 GO:0003723
Mibi11g1911 256 MobiDBLite consensus disorder prediction 168 256 - -
Mibi11g1911 256 Gene3D - 1 88 IPR012677 -
Mibi11g1911 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Mibi11g1911 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Mibi11g1911 256 SUPERFAMILY RNA-binding domain, RBD 83 172 IPR035979 GO:0003676
Mibi11g1911 256 FunFam Serine/arginine-rich splicing factor RS31 87 178 - -
Mibi11g1911 256 MobiDBLite consensus disorder prediction 168 190 - -
Mibi11g1911 256 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Mibi11g1911 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 247 - -
Mibi11g1911 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Mibi11g1911 256 Gene3D - 89 176 IPR012677 -
Mibi11g1911 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1911 Mibi-ChrMibi11 40868537 40872414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1911 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 26.012 2.41e-09 55.5