Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1910 ATGAGTGTAAACAAGGGAGGAGGAGGTGGAAGAGAGAGAAGGTCAGAAGGGTCAGCAGGAGAAGAATACAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGGGTACATAGGGGTGAGGCAGAGGCCATCAGGAAGATGGGTGGCGGAGATAAAGGAGTCATCCCAGCATGTCCGCCTCTGGCTTGGAACCTATGACACACCAGAGGAGGCGGCTCATGCCTACGACGAGGCAGCCCGCACCCTCCGCGGCGACAACGCCCGCACCAACTTCCAATGCCAAGGCAGGCAGCAGAGTGGACTCAGTAGCTTTAATTTTGGTTATCTCAAGGCCAAGCTCAGCACCAATCTTCATAGCTTCATGTCTAGGGCAGGCCATGGCAGTAAGAATAAAGCATCCAACAGCAGCAGGGTGACTGACCATTTTACCCTCGCCACCATATTCCACAGGAGCAACAACCACCACATCATGCCTCCTCCTACTCACGACGACGACGACATGGTGGACAAAGTGGTGCAGCCTAGCATCATAGTGCCCCCTGCAGGTGCCTCCACCTGGAACTGGAATTGTTGTAGCTCCCAGTGGGACGGATCTGATCATGCGGGCGGCGGGGTACATAATTTGGAGCACCTCCTCGGCTGGGCTCACACTCCCCTTCATCATCATCATCATCTTCATGCTCATACTACTGCTGCTGCTGCTAATCACGTCTATGACCATCATCATCATCATCATGAACAACAACAACAACAAGAAGGATCGAGGAGCAAGAGGTTTAAGGTTTCTTCTTCACTTCTGGTGCCCCCTACTTTCATTCCCTCTCCCACTCACTCTACTGCCACGGCTTCTGCACCTCCTTATCATCATCATATTAGCGGTGACGAGTGA 891 0.523 MSVNKGGGGGRERRSEGSAGEEYKEKKKKKKKKKEGYIGVRQRPSGRWVAEIKESSQHVRLWLGTYDTPEEAAHAYDEAARTLRGDNARTNFQCQGRQQSGLSSFNFGYLKAKLSTNLHSFMSRAGHGSKNKASNSSRVTDHFTLATIFHRSNNHHIMPPPTHDDDDMVDKVVQPSIIVPPAGASTWNWNCCSSQWDGSDHAGGGVHNLEHLLGWAHTPLHHHHHLHAHTTAAAANHVYDHHHHHHEQQQQQEGSRSKRFKVSSSLLVPPTFIPSPTHSTATASAPPYHHHISGDE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1910 296 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Mibi11g1910 296 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Mibi11g1910 296 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Mibi11g1910 296 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Mibi11g1910 296 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Mibi11g1910 296 MobiDBLite consensus disorder prediction 240 254 - -
Mibi11g1910 296 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Mibi11g1910 296 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Mibi11g1910 296 MobiDBLite consensus disorder prediction 240 296 - -
Mibi11g1910 296 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 221 - -
Mibi11g1910 296 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Mibi11g1910 296 MobiDBLite consensus disorder prediction 255 286 - -
Mibi11g1910 296 MobiDBLite consensus disorder prediction 9 25 - -
Mibi11g1910 296 MobiDBLite consensus disorder prediction 1 39 - -
Mibi11g1910 296 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1910 Mibi-ChrMibi11 40852931 40853821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1910 24 92 AP2-EREBP Transcription Factor Family AT5G19790 62.319 1.46e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi11g1910 AP2 1.4e-15 CL0081