Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1890 ATGGTTAGAGGGAAGACTCAGATGAGGCGTATAGAGAACGCGACGAGCAGGCAGGTGACCTTCTCAAAGCGCCGAAATGGTCTTCTCAAGAAGGCCTTTGAGCTCTCTGTGCTTTGTGATGCTGAGGTGGCTCTCATCATCTTCTCCCCCAGAGGCAAGCTTTATGAATTCGCCAGCTCCAGCAGCTTGCACGAGACAATTGAACGCTACCGCAAGCATACAAGGGATACTCAAACAGCCAACAGATCTTGTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAAGCATGATGAAGAAAATTGAGCTTCTTGAACTTTCAAAACGGAAACTCTTGGGGGAAGCTTTAGGGTCATGCTCCATCCAAGAGCTAAACCAGATAGAACAACAGTTGGAGAAGAGTGTGAGCATCATTCGAGCAAGAAAGAATCAGGCTTACAACGAACAAATCGAGCAACTAAAAGCAAAGGAAAAAGTCCTAGAAGCTGAAAATGCAAGGCTCTCTGAGAAGTGTGTCATACAGCCACAGCAAGCAACAAATGGTGAGCAGCAGAGAGGAAGCCAACCCTATGCAGAAAGCAGTAGTCCAAGTTCAGAGGTGGAAACTGAGTTATTCATTGGATTCCCAGACACCAGAGCAAGACGAAGCATTCTTCCTCCTCTACCTCCAAGGTCTAGCTGA 684 0.4664 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSSLHETIERYRKHTRDTQTANRSCEQNMQHLKQEAASMMKKIELLELSKRKLLGEALGSCSIQELNQIEQQLEKSVSIIRARKNQAYNEQIEQLKAKEKVLEAENARLSEKCVIQPQQATNGEQQRGSQPYAESSSPSSEVETELFIGFPDTRARRSILPPLPPRSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1890 227 Gene3D - 14 103 IPR036879 GO:0003677|GO:0046983
Mibi11g1890 227 Coils Coil 81 108 - -
Mibi11g1890 227 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Mibi11g1890 227 Coils Coil 144 171 - -
Mibi11g1890 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi11g1890 227 FunFam MADS-box protein SOC1 14 96 - -
Mibi11g1890 227 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi11g1890 227 MobiDBLite consensus disorder prediction 174 202 - -
Mibi11g1890 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Mibi11g1890 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi11g1890 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi11g1890 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi11g1890 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi11g1890 227 MobiDBLite consensus disorder prediction 174 227 - -
Mibi11g1890 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi11g1890 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi11g1890 227 CDD MADS_MEF2_like 3 79 IPR033896 GO:0000977|GO:0045944
Mibi11g1890 227 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1890 Mibi-ChrMibi11 40600409 40608785 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1890 1 159 MADS-box Gene Family AT2G45660 76.101 1.68e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi11g1890 K-box 2e-25 No_clan