Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1888 ATGAGGCGTATAGAGAACGCGACGAGTAGGCAAGTGACCTTCTCAAAGCGCCGAAATGGTCTTCTCAAGAAGGCCTTTGAACTCTCTGTGCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATTTGCCAGCTCCAGCAGCTTGCACGAGACAATTGAACGCTACCGCAAGCATACAAGGGATACTCAAACAGCCAACAAATCTTGTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAAGCATGATGAAGAAAATTGAACTTCTTGAACTTTCAAAACGGAAACTCTTGGGGGAGGGTTTAGGGTCATGCTCCATCCAAGAGTTAAACCAGATTGAACAACAGTTGGAGAAGAGTGTGAGCATCATCCGAGCAAGAAAGAATCAGGCTTACAACGAACAAATCGAGCAACTAAAAGCAAAGGAAAAAGTCCTAGAAGCTGAAAATGCAAAGCTCTCTGAAAAGTGTGGCATACAGCCACAGCAAGCAACAAATGGTGAGCAGCAGAGAGGAAGCCAACCCTATGCAGAAAGCAGTAGTCCAAGTTCAGAGGTGGAAACTGAGTTATTCATTGGATTACCAGAGACCAGAGCAAGACGAGGCATCCTGCCTCCTCTACCTCCAAGGTCTAGCTGA 663 0.4585 MRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSSLHETIERYRKHTRDTQTANKSCEQNMQHLKQEAASMMKKIELLELSKRKLLGEGLGSCSIQELNQIEQQLEKSVSIIRARKNQAYNEQIEQLKAKEKVLEAENAKLSEKCGIQPQQATNGEQQRGSQPYAESSSPSSEVETELFIGLPETRARRGILPPLPPRSS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1888 220 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Mibi11g1888 220 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Mibi11g1888 220 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Mibi11g1888 220 Coils Coil 137 164 - -
Mibi11g1888 220 FunFam MADS-box protein SOC1 7 89 - -
Mibi11g1888 220 MobiDBLite consensus disorder prediction 164 220 - -
Mibi11g1888 220 Gene3D - 7 96 IPR036879 GO:0003677|GO:0046983
Mibi11g1888 220 Coils Coil 74 101 - -
Mibi11g1888 220 MobiDBLite consensus disorder prediction 164 195 - -
Mibi11g1888 220 CDD MADS_MEF2_like 1 72 IPR033896 GO:0000977|GO:0045944
Mibi11g1888 220 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Mibi11g1888 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
Mibi11g1888 220 Pfam K-box region 78 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi11g1888 220 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Mibi11g1888 220 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi11g1888 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1888 Mibi-ChrMibi11 40560549 40570334 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1888 1 152 MADS-box Gene Family AT2G45660 75.658 5.21e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi11g1888 K-box 1.1e-25 No_clan