Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1886 ATGGGGAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTGACTTTCTCAAAAAGAAGGAACGGTCTGATGAAGAAAGCCTATGAACTGTCAGTGCTTTGTGATGCTGAGGTCGCTCTTATCATTTTCTCTGGTCGTGGCAAGCTCTATGAGTTCGGAAGTGCTGGGATTGCTAAGACCCTGGAACGATACCAGAGATGCACTTTTACATCTCAAGATACCAATGTCCTTGAGCTTGAAACCCAGGCATAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAGAAGACTCAAAGGCATTTGCTTGGGGAAGATCTAGGACCACTGAATGTGAAAGAGCTTCAGAGTCTTGAGAAGCAGCTTGAAGGAGCCCTATCACTAGCTAGGGAAAGGAAGACAGAGATAATGATAGAACAAATGGAAGATCTACGCAGAAAGGAACGCCGTCTGGGGGACATTAATGAGCAGCTGAGACTCAAGGTAGAAGGAGAGGGATATAATGTGAAAAGCATAGAGAGCTTCCATTCTCATAATTCAAACTCAGCTTCAGCTGCTGCCAATCCCAACTTCTTCCCCTGCCAACCAAACCCTCTCCTCGATTCTCTCCATCTTGGGTACCATCATCAGTATGTTGAAGCAGCAGAGACATCTAATCATCAAGCTTCCAACAAGCCCAATCTGCTTGCTGAGACTAACTTCATGCAGGGCTGGCTTCTCTGA 738 0.458 MGRGRVELKRIENKINRQVTFSKRRNGLMKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGIAKTLERYQRCTFTSQDTNVLELETQAXVSKLKAKYESLQKTQRHLLGEDLGPLNVKELQSLEKQLEGALSLARERKTEIMIEQMEDLRRKERRLGDINEQLRLKVEGEGYNVKSIESFHSHNSNSASAAANPNFFPCQPNPLLDSLHLGYHHQYVEAAETSNHQASNKPNLLAETNFMQGWLL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1886 245 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Mibi11g1886 245 Coils Coil 142 166 - -
Mibi11g1886 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi11g1886 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi11g1886 245 FunFam MADS-box transcription factor 1 13 88 - -
Mibi11g1886 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
Mibi11g1886 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi11g1886 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi11g1886 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi11g1886 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi11g1886 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mibi11g1886 245 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Mibi11g1886 245 Coils Coil 117 140 - -
Mibi11g1886 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi11g1886 245 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi11g1886 245 Pfam K-box region 85 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1886 Mibi-ChrMibi11 40538552 40541805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1886 1 245 MADS-box Gene Family AT2G45650 57.647 2.07e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi11g1886 K-box 1.6e-26 No_clan