Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1832 ATGGCATTTACAGGAACATTGGATAAATGCAATGCATGTAATAAAACTGTGTATGTGGTCGACATGTTGTCTCTTGAAGGAAATCCATACCATAAATCTTGCTTTAGATGCAGTCACTGCAAAGGGTATCTTTCGATGAGTAGCTACTCCTCAATGGACGGTGTTCTCTATTGCAAGCCTCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTCACACAGCAAAGTCTTCTGAAAAATCACATGATGCGAGCAAGAACTTAAACAGACTCTCTTCGTTGTTCAGTGGAACCCAAGACAAATGTGCAGTTTGTACTAAAACAGTCTATCCTCTGGAAAAGGTGACATTGGAAGGAGAAAACTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCCCTCACACACTCATCCTATGCAGCCCTTGACGGTGTCCTGTACTGCAGGCACCACTTTGCTCAACTTTTCATGGAGAAAGGTGATTACAACCATGTCAAGCAAGTCACTGCTCACAAAAAGAACACCGCTTCTAATGACGATCATGAAGATGAACATCAATCTAAGGACCAGGATGCCACTAAACATGAAGAAGAAGAAGAAGAAGAAAAAGTAGAAGAAGAAGATGAACAATCTTGA 654 0.4144 MAFTGTLDKCNACNKTVYVVDMLSLEGNPYHKSCFRCSHCKGYLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFHTAKSSEKSHDASKNLNRLSSLFSGTQDKCAVCTKTVYPLEKVTLEGENYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGDYNHVKQVTAHKKNTASNDDHEDEHQSKDQDATKHEEEEEEEKVEEEDEQS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1832 217 Pfam LIM domain 106 161 IPR001781 -
Mibi11g1832 217 Pfam LIM domain 10 65 IPR001781 -
Mibi11g1832 217 Gene3D Cysteine Rich Protein 6 74 - -
Mibi11g1832 217 Gene3D Cysteine Rich Protein 100 170 - -
Mibi11g1832 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Mibi11g1832 217 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mibi11g1832 217 SMART lim_4 105 157 IPR001781 -
Mibi11g1832 217 SMART lim_4 9 61 IPR001781 -
Mibi11g1832 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Mibi11g1832 217 MobiDBLite consensus disorder prediction 177 217 - -
Mibi11g1832 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Mibi11g1832 217 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Mibi11g1832 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Mibi11g1832 217 FunFam LIM domain and actin-binding 1 4 74 - -
Mibi11g1832 217 Coils Coil 184 216 - -
Mibi11g1832 217 MobiDBLite consensus disorder prediction 201 217 - -
Mibi11g1832 217 MobiDBLite consensus disorder prediction 177 200 - -
Mibi11g1832 217 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mibi11g1832 217 FunFam LIM domain and actin-binding 1 100 170 - -
Mibi11g1832 217 PANTHER OS06G0237300 PROTEIN 6 88 IPR045268 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1832 Mibi-ChrMibi11 39732642 39734453 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mibi11g1832 LIM 3e-11 CL0167