Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1797 ATGCACGCAATTTGCGTTCATCCTCAAGGCAAATTAGAAGCTAAAGCTTACATAATCTTCCACTCACGCCGTATGGCTGTGGTGAGTCCTGTGCCTGCAATTCCACCAAGTTTCAGTTCTGTGAGGTCGCCGCCTCAAGATTTTCGGATCACCGGAAACATGGCTGGGATGGGAGAGATTGTGGAGGAGCCTAACATTTGTGTGGTTAATGACACTATCTATGTTGCTGTGACAAAAGATCTGAAAGAGAGCAAGTCAAATCTGACATGGGCAATACAAAGCTCTGGAGGGAACAAGATTTGCATCCTCCATGTTCATGTGCCTGCAACTATGATCCCCTTGATGGGCACTAAATTTCCAGCAAGTTCATTGGAAGAACAGGAAGTTAAAGCATACTGGGAACTTGAAAGGCAAAACATGAATAAGAATCTAAATGAATATCATCTCTTCTGTTCACGAATGGGGGTCCGTGCAGAAAAGTTGCATATTGAAATGGAATGCATTGAGAAAGGTATTGTAGAGCTCATCTCTCGGCATGGTATACATAAACTTGTCATGGGAGCAGCATCAGACAATCGTCATTCTAGGAAAATGATTGACCTCAAATCTAGGAAAGCCATTTATGTGAGTAAACATGCTCCAGCTTATTGTCAAATACAGTTTGTCTGCAAGGGGCGACATATACACACTAGAAATAGCTGCTTGGATGATGGTAATGAAGAGGTTGCATCACCTTTGCCGCCACGGAAGCCAAACCCTGAAGCTGTGTTTTCACCTCAGTTGAGGTCTCAATCTGTTACGATGGGGCAGAATAATAGGGAAAAGCTTGAGTTACTTCCCAGAGCAATGTCTGCCATTTCAGGGCATAAAGGGAGAACAGTGACCTTTTCTTCTCCAGACACTGAAGGGTTTTACTGTTCAAGTAGCAGGTTCAGTACAGAAGTTAGTAGTGTTGTGTCAGATAGGCTGTTAGGAAAAAGTCCTTCAGTTTTCTCAACATGTTCTGAAAGTGGTGCTGCTGAATCAGAATTGACTCCAAAATTGCTTTGTGAGGGGAATGGGATTGTAATAGACTCGAGTGAATTTTCTCCAGTTATAGCAAATCTCGATCATTCATCTCCTCCGAGTGTACTGGATGGAGGAATGGATGACTCTCTCTACTATCAACTTGAACTAGCCATGTCTGAAGCTGAGAATGCTAGACGGGATGCCTTTCAAGAAACACTTAAACGTGGGAAGGCCGAAAAAGATGCACTTGATGCCATGCGAAGGGCTAAAGCCTCTGAAAGCTTGTATAAAGACGTGCTCAAACAAAGGAAACAAGTTGAAAAAGCACTAGGAAAAGAAAAAGAAGAACTTGAAGGAATGAAGAGCGAGATGGACAAAGTTAGGGAAGAACTTAGACTTGCCATAGATCAAAAGCTGTCTTTGGAGAGTCAAATTGAATCATCTGAATTCATGGTAAGGGACTTAGAACAGAAGATTAAAACTGTTGTGGAACTGTTGACAATATGCAAGAAAGAAAGAGATGAGTTCCAGATACAGCGCAACATTGCATTGAAAGAGGCCGAGGAGTTAAGGAAAAAACAAGGAGAGGTTACAAGCATACATGGGCCTGAGTCGTTTTCAGAGTTCTCGTTTCTAGAGATTGAACAAGCAACAAGGAACTTTGATTCATCTCTAAAGATTGGAGAGGGGGGGTATGGAAATATCTATAAAGCTACCTTGCATCTAACCGAAGTGGCCATAAAGATGTTGCACGCTAACAGCTCTCAAGGACCTGCAGAATTTCAACAAGAGGTTGATGTATTGAGTAAGTTAAGACATCCAAACCTTATTACACTCATAGGAGCCTGCCCAGAATCTTGGACTCTTGTCTACGAGTATCTACCTAATGGAAGCCTTGAAGATCGGCTCAATCGCAAGGATAACTCAGCTCCACTTTCATGGGAAACTCGGATCCGTATTGCTGCTGAACTCTGCTCTGCTCTCATCTTCCTTCATTGCTCTAGGCCTCATTCCATAGTGCATGGAGACTTGAAACCTTCAAATATTCTACTTGATGCAAACTTTGTTAGCAAGCTTAGTGACTTTGGAATCTGCCGTATATTATCCAACATTGAGACTTCAGGTGATGGTGATGCTACAGATTGTTGCAGAACTGTTCCAAAGGGCACTCTAGTCTACATGGATCCTGAATTTCTTGTTTCCGGGGTTCTTACACCAAAATCAGATGTTTATTCATTTGGGATCATATTGTTAAGATTGTTGACTGGGAGGCCAGCCTTGGGGATAACAAAGGAAGTGCAATATGCATTAGACACTGGAAAGTTTAAATCTCTCTTGGATCCTTTGGCTGGAGATTGGCCATTTGTGCAAGCTGAACAGTTGGCTAATGTGGCTCTAATGTGCTGTGAGTTGAACCGAAAGAACCGACCAGATCTTCGTTCTGATGTCTGGAAAATACTGGAAGCAATGAATGCTTTTTCTTCAGGCACAAATTCCTTTGAACTAGGTTATGATCAAGGATCTGAGCAACCTCCTTCATATTTTATTTGTCCAGTATTTCAGGAAATGATGGTAGATCCACATATTGCAGCGGATGGTTTTTCATATGAAGGTGAGGCTATACGAGGATGGCTGGATAGAGGTCATGACACGTCACCCATGACAAATGAAAAACTTGAACATGGTATTATTGTACCAAATCATACTCTTCGCTCTGCAATTTGGGACTGGCTACAACAACATCACTGA 2757 0.4229 MHAICVHPQGKLEAKAYIIFHSRRMAVVSPVPAIPPSFSSVRSPPQDFRITGNMAGMGEIVEEPNICVVNDTIYVAVTKDLKESKSNLTWAIQSSGGNKICILHVHVPATMIPLMGTKFPASSLEEQEVKAYWELERQNMNKNLNEYHLFCSRMGVRAEKLHIEMECIEKGIVELISRHGIHKLVMGAASDNRHSRKMIDLKSRKAIYVSKHAPAYCQIQFVCKGRHIHTRNSCLDDGNEEVASPLPPRKPNPEAVFSPQLRSQSVTMGQNNREKLELLPRAMSAISGHKGRTVTFSSPDTEGFYCSSSRFSTEVSSVVSDRLLGKSPSVFSTCSESGAAESELTPKLLCEGNGIVIDSSEFSPVIANLDHSSPPSVLDGGMDDSLYYQLELAMSEAENARRDAFQETLKRGKAEKDALDAMRRAKASESLYKDVLKQRKQVEKALGKEKEELEGMKSEMDKVREELRLAIDQKLSLESQIESSEFMVRDLEQKIKTVVELLTICKKERDEFQIQRNIALKEAEELRKKQGEVTSIHGPESFSEFSFLEIEQATRNFDSSLKIGEGGYGNIYKATLHLTEVAIKMLHANSSQGPAEFQQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLNRKDNSAPLSWETRIRIAAELCSALIFLHCSRPHSIVHGDLKPSNILLDANFVSKLSDFGICRILSNIETSGDGDATDCCRTVPKGTLVYMDPEFLVSGVLTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKFKSLLDPLAGDWPFVQAEQLANVALMCCELNRKNRPDLRSDVWKILEAMNAFSSGTNSFELGYDQGSEQPPSYFICPVFQEMMVDPHIAADGFSYEGEAIRGWLDRGHDTSPMTNEKLEHGIIVPNHTLRSAIWDWLQQHH 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1797 918 Gene3D Phosphorylase Kinase; domain 1 526 629 - -
Mibi11g1797 918 Pfam U-box domain 848 917 IPR003613 GO:0004842|GO:0016567
Mibi11g1797 918 Pfam Protein kinase domain 561 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g1797 918 PANTHER OS02G0152300 PROTEIN 73 910 - -
Mibi11g1797 918 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 83 198 - -
Mibi11g1797 918 CDD RING-Ubox_WDSUB1_like 851 892 - -
Mibi11g1797 918 ProSiteProfiles U-box domain profile. 846 918 IPR003613 GO:0004842|GO:0016567
Mibi11g1797 918 ProSiteProfiles Protein kinase domain profile. 557 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g1797 918 SMART Ubox_2 850 913 IPR003613 GO:0004842|GO:0016567
Mibi11g1797 918 SMART serkin_6 557 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g1797 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 675 687 IPR008271 GO:0004672|GO:0006468
Mibi11g1797 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 845 918 IPR013083 -
Mibi11g1797 918 ProSitePatterns Protein kinases ATP-binding region signature. 563 584 IPR017441 GO:0005524
Mibi11g1797 918 Gene3D Transferase(Phosphotransferase) domain 1 630 837 - -
Mibi11g1797 918 Coils Coil 509 529 - -
Mibi11g1797 918 SUPERFAMILY Protein kinase-like (PK-like) 534 816 IPR011009 -
Mibi11g1797 918 CDD STK_N 72 225 - -
Mibi11g1797 918 FunFam receptor-like protein kinase FERONIA 520 629 - -
Mibi11g1797 918 SUPERFAMILY RING/U-box 840 917 - -
Mibi11g1797 918 Coils Coil 432 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1797 Mibi-ChrMibi11 39426440 39434796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1797 25 917 U-box Gene Family AT2G45910 51.512 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mibi11g1797 Pkinase 7.6e-41 CL0016