Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1788 ATGCAGTCTACTGGTCCTGGTAGTGGTGGGCCCGGCCGGAACCCAGGAGTGGGGCCGGCTGGGCGTGCCGCATCATCATCATCTTCCCAATCCTCTCCATCTTCAGCAGTGTCAACTCCTCACTTGGGGTTAGACACTTTGCAACAGCAGCAGCAGCAAAACCAGCAGATTGGTTCTAGGCAGTCATTGCAACAGCCCTTACCTAGAAAACCTGAAGGGAATGAAGCATTTTTAGCTTATCAGGCTGGGCTTCAAGGAGTGTATGGTACCAACAATTTATCGTCTCCCAGTCCTGCGCAACTGCCCCAACAATCACAGAAATCAATTGACTTCACTCAGCATGGTTCCAGTCATTCCAGTCAGGAGGCCCAGATGAGGGGTCAAGGAATGGAGCAACAGATGCCCAACCCTGTCCATCAAGCATACCTTCAATATGCTCTGCAAGCTGCCCAGCATAAGTCTGCTATGGCAATGCAATCACATCAACAAACTAAAATGGGATTGTTAGGCTCTTCAGCGGTAAAGGACCAAGAAATGCGCATGGGAAACTTGAAAATGAAGGATCTAATTCCCTTGCAAGCAGGTCAAGCACAATGTTCGACTCCTAGAAGCTCGTCTGAACAATTCTCTCGCGGGGAAAAGCCGATGGATCAAGGACAGCATCAAGCAATGGATCACAAGAATGTGGGAAAGTCTTCAACCCGGGGACTGGCCATTGGACACATAATGCCAGGAAATGTGATAAGACCCATGCAAGCACCAACAAATCCTCAGGGCACCCAAAATGTTGTGAACAACCAGGTGGCAGTATCTGCCCAACTGCATGCTATGCAGGCATGGGCACGTGAACGTAACATTGATCTATCACATCCTGCAAATGCTAACTTAATGGCACAACTCATTCCTATGATGCAGTCAAAGACGGTTTCACAACAAAAGCCAAATGAGAATAGCATTGCTCCTCAGCCATCACTAGTCCCTGTTTCGAAACAGCAAGTTACTTTTCCAATGGAGAACCCAGCACATGCTAATTCATCAAGTGACTTGTCTGGGAAGTCTGGATGTGCAAATGCCAGGCAGACAGTTCCTTCCAGCCACTTGGTTCCACCCACAAATGCTGGTACAGCCAGTAGTGGCAGTGACGCGGCGGTGCAACAAATCAACATTCATGGCAGAGAGTCTCAAGCATTAATGAGGCAACCTGTTGCTGCTGGAAATGGATTGCCTCCTATGCATCCCCAACAGTTTTCTCCTAACAGGAATCATGTTGCAGATCATCCTTTGAATGCCAAAAAATCACTACCAGGCCCAGATTTACCACAAGTTCAGCACATGAGGCAGTTTAACCAAACTTCTGCTCAGACTACTGGTTCCACAAATGATGGGAATTCAGGAAACCACGTCAGACCCGTTGGGGCACCAACTCAGACACCTCAGCAACGACCTGGATTTACCAAACAGCAGCTGCATGTACTTAAAGCACAGATATTAGCACTCAGGAGACTGAAGAAAGGAGAAGCTACACTTCCTCAAGAACTTCTTCAGGCTATTGTTCCGCCACCTCTTGAGTTACAATTGCAGCAGACTGTCCATCCTGCTGGAGGACAGAATATAGAAAAATCTGCTGGCAGTACAGCGGCAGAACACCCAAGGCAGATTGAGTCCAAAACAAAGGATATTCAATCTGTCCCTGCAATAAATGAACAGAGTTCCTCAAAGCAGGAAGCCTCTTCCAGAGATGAAAAATCCACTGCTCCAACAGTTCACATGCAAGCTATGCCAGTGTTAGCAAAGGAAGCTTTTTCTTTTGGAAAAGAACAGCGGCAATCAATGAAGTCAGACCAGGAGGATGATCATGGCATCTGCACAACTCCTGTTAGAACTGAGTTGCCTTTGGAGAGGGGAAAGGCTGTCGTACCACATGACACAGTTCAACTTAAAAAACCTGCACAAACTAGCCCTGTTACCCAACTAAAGGATGTGGCATCTGCGAAAAAATATCATGGTCCCCTTTTTGATTTCCCTTCTTTCACTTGGAAACCTGACTCATCTATGTCACCTACGGTGGTGAACAACAACAATTTGTCTCTGGCCTATGACGTCAAAGATCTTCTTTATGAGGAAGGCATGGTGGTACTTACAAAGAGAAGGGCAGAAAATTTAAAAAGGATTGAAGGTTTACTGGCGGTGAACTTGGATAGAAAAAGAATTAGGCCAGATCTTGTTTTGAGGCTGCAAATTGAAGAGAAAAAGCTCCGTCTTTTAGATCTTCAGTCACGGCTGAGGGAAGAGATCGATCAGCAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATACCGCAAGTTTGTTAGACTGTGTGAGCGTCAGCGTGTTGAACTTGCCAGACAAGTGCAAGCATCTCAGCGAGCTTTACGGGAGAAACAACTCAAATCCGTATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACACTGGGCTGTACGTGATGCTCGAATTGCGCGCAACAGGGGTGTGGGAAAATATCATGAGAGAATGCTGAGGGAATTCTCAAAGCGTAACGATGATGATAGGAATAAAAGGATGGAAGCCTTGAAAAATAATGATGTTGACAGATACAGGGAGATGTTGCTAGAGCAGCAGACTAGCCTCCCCGGTGACGCGGCTGAGAGATATGCTGTGCTTTCGTCCTTCTTAACACAGACTGAGGACTATCTACAAAAATTGGGAAGTAAAATAACATCTGCTAAAAATCAGCAGGAAGTGGAGGAGGCAGCAAGAGCGGCTGCAGCTGCAGCACGGTTGCAGGGTCTTTCTGATGAAGAAGTCAGAGCAGCTGCAGCTTGTGCCGGGGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTCAGCAAGTATTACAGTCTTGCTCATGCCGTGAATGAAAAGGTCATAAGGCAGCCATCTATGTTACGAGCTGGAACCTTGAGAGATTATCAACTTGTTGGCTTGCAATGGATGCTTTCATTGTACAACAACAAGTTGAATGGAATATTAGCAGATGAGATGGGTCTTGGTAAAACTGTGCAGGTTATGGCCTTGATTGCCTACTTGATGGAATTTAAAGGAAATTATGGCCCACATCTTATAATTGTTCCTAATGCAGTTTTGGTGAATTGGAAGAGTGAGTTGTATAATTGGTTACCCTCTGTATCATGCATTTTTTATGTTGGAGGGAAGGACCAACGGTCAAAATTATTTTCTCAAGAGGTTTGTGCCATGAAATTCAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGATCCAAATTGTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTCTAGCCCGCGATCTTGACAGATATCGTTGTCAGAGACGTCTTCTTCTGACAGGAACACCCTTGCAGAATGATCTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATCGAAAAGCATTTCACGATTGGTTTTCAAAACCTTTTCAAAAGGAAGATCCTACTCAAATTGTTGAGGATGACTGGCTTGAGACAGAAAAGAAAGTTATCATTATTCATAGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGTGTGGAAGATGTTGAAGGCTCACTACCACCAAAGGTCTCCATAGTTTTACGATGTAAAATGTCAGCTATTCAGAGTGCCATTTATGACTGGATTAAATTCACCGGCACCCTTCGGCTTGATCCTGAGGATGAGAAGCTTAGAGTTCAAAGGAATCCACTTTACCAGGTGAAGCAGTACAAACCTTTGAATAATAGATGCATGGAGCTGCGCAAGACCTGCAACCATCCTTTGCTTAATTACCCATACTTCCATGACTTATCCAAAGATTTTCTTGTGAAATCTTGTGGGAAGTTGTGGATCCTTGATAGGATCCTTATTAAACTGCAACGAACTGGACATCGAGTTCTGCTGTTTAGTACTATGACAAAGCTTCTGGACATCATAGAAGAATACCTGCAATGGAGACGGCTTGTTTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAAACAGCTATAGTGGACTTTAACAGCCCAGGTTCAGACTGTTTCATCTTCTTGCTCAGTATTAGGGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCAGACACAGTCATCATATACGATCCTGATCCAAACCCAAAAAATGAGGAGCAGGCAGTTGCGAGAGCTCATCGCATTGGACAGACTCGAGAAGTCAGGGTGCTCTACATGGAAGCTGTTGTTGACCAGATTCCTAGCCATCAAAAAGAGGATGAACATAGAAGTGGGGGCAGTGTCAACTTGGAGGATGAACTTGCAGGTAAGGATCGTTATGTGGGATCCATTGAGAGCCTCATTAGGAACAACATTCAACAATACAAGATTGATATGGCCGATGAGGTAATCAATGCGGGACGTTTTGATCAAAGAACAACGCATGAAGAGAGACGCATGACATTGGAGACACTATTACATGACGAAGAGAGGTATCAAGAAACTGTCCACGATGTTCCGTCACTACAGGAGGTGAATCGCATGATTGCCAGGAGTGAAGAAGAACTCGAGCTGTTTGATCAAATGGATGAAGAGCTGGATTGGACTGGGGAGATGACACGGTATGATCAGGTGCCAAAGTGGCTTAGAGCCAGTACAAGGGAAGTCAATGCCACTATTGCAGCGTTATCAAAAAGGCCTTCAAAGAACACTATCTTGGGTGGTGGTATCGCTTTGGAATCCAGTGAAATGGGTTCTGATGCATCTGCCAAAACTGAAAGGAGAAGAGGCCGACCCAAGGGGAAAAAACATCCTAATTATAAAGAGTTAGAAGATGAAAATGGAGAATCCTCTGAAGCGAGTTCTGAAGAAAGAAATGGATATTCTGCAAATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGATATAGTGGTGATGATGGAGCTCAGCCAAATAATAAAGATCAAATGGATGATGGTCCACCTTGCGATGCAGGATATGAATTTCCTCATTCCTCAGAACGCATGAGGAACGGTCATATGATTGAAGAAGCTGGTTCCCCAGGATCATCCTCGGACAGTCAAAGGTTGACACAGACTATATTTCCTTCAGTTTCCTCTCAGAAATTTGGTTTCCTCTCTGCATTAGATTCTAAGCCAAGTTCCATTTCCAAAAGGATGATTGATGACTTAGAGGAAGGGGAAATTGCGGTATCTGGTGATTCTCACATGGATCACCAGCAATCTGGCAGTTGGATTCATGATCGTGATGAAGGAGAGGATGAGCAAGTTTTGCAACCCAACCTTAAACGTAAACGCAGTCACCGTGCTCGACCGCGTCATGCTGTGGACAGGATTGAGGAAAAGTCTAGCAGTGAGATGGCATATCTTCAGCATGGAGAATCAGCTCATTTGGCCATCCAAGCAGACCATAAATATCGTGCCCAATCACGGATTGACCCTGATGTAAAATCATGTGGAGAAGTTAATGCTGCCGGGCATGATCGGAATGAATTGTCGATAAAAAATAAGCGAAGTTTGCCTTCAAAGAGAGTAACTTCTAAATTGCGTGGTTCACCGAAATCTGGTAGATTGAACTGTATTTCTGACCCTTCAGAGGATGGTGGTGAACAACTCACAGAAAATGGGGAGGGCAAGCCTGTCAATTCAAGGGGGTCTTCAACTATTGGTGCTAAAATGTCTGAAATAGTCCAGAGAAAGTGCAAGAATGTAATTGGTAAGTTTCAAAGGAGAATAGATAAGGAAGGTCGTCAAATTGTACCTTTGCTTACTGACTTGTGGAAGAAGAATTCTGGACACACTGGTGGCTGTGGGAATAATTGGCTGGACATACAGAAGATTGATCAGCGAATTGATAGGTTTGAATATAATGGGGTACTGGAGCTTGTGTGTGATGTGCAGTTCATGTTGAAGTGTGCGATGGATTTTTATGGGTTCTCACTTGAGGTAAGATCTGAAGCAAGGAAGGTCCATGATCTCTTCTTTGATATCTTGAAAGTTGCATTTCCTGATACGGACTTCCAAGGGCCAAGAATTGCACTTTCTTTTGCCGCACCAACTTCCGTCAGTGCTCTAACATCCCCGAGGCAGTTGGCTGGGAGCCCAAGCAGAAGACACAAGCTGATAAATGAGGTGGAAAATGACTCAAGCCCTTCACAGAAGCAAATGCATCGGGGTTTTATTCCGAGTGGTGAAAGCACCCGGATCAGAGTGCATCTGCCACCGAAGGATTCAAGAACCGGAACAGCTTCCATCAGTGCCAGGGAGCAAATTCAGCAGGATAATTCTCCTCTACTCACTCATCCAGGTGAACTGGTAGTATGCAAGAAGAGAAGAAATGAGAGGGACAAATCCTCAGGGAAGACTAGGGGTGCCTCAGCTGGCCCTGTTTCACCACCTAGCTCCGGTCCTGCTGTAAGAAGTCCCGGACCAAGTTCAGGTTCGAAGGATCCTAGACTAAGTCAACAGCCTGCTCAAGGGTGGACGCGCCAGTCGTCTCAGCAACCAAACGGGTCTGGTGGATCAGCCGGTTGGGCAAATCCTGTGAAGCGGTCAAGATCTGTTTCTGGGAAAAGGAGACGGAGCCTTCAATAG 6723 0.4505 MQSTGPGSGGPGRNPGVGPAGRAASSSSSQSSPSSAVSTPHLGLDTLQQQQQQNQQIGSRQSLQQPLPRKPEGNEAFLAYQAGLQGVYGTNNLSSPSPAQLPQQSQKSIDFTQHGSSHSSQEAQMRGQGMEQQMPNPVHQAYLQYALQAAQHKSAMAMQSHQQTKMGLLGSSAVKDQEMRMGNLKMKDLIPLQAGQAQCSTPRSSSEQFSRGEKPMDQGQHQAMDHKNVGKSSTRGLAIGHIMPGNVIRPMQAPTNPQGTQNVVNNQVAVSAQLHAMQAWARERNIDLSHPANANLMAQLIPMMQSKTVSQQKPNENSIAPQPSLVPVSKQQVTFPMENPAHANSSSDLSGKSGCANARQTVPSSHLVPPTNAGTASSGSDAAVQQINIHGRESQALMRQPVAAGNGLPPMHPQQFSPNRNHVADHPLNAKKSLPGPDLPQVQHMRQFNQTSAQTTGSTNDGNSGNHVRPVGAPTQTPQQRPGFTKQQLHVLKAQILALRRLKKGEATLPQELLQAIVPPPLELQLQQTVHPAGGQNIEKSAGSTAAEHPRQIESKTKDIQSVPAINEQSSSKQEASSRDEKSTAPTVHMQAMPVLAKEAFSFGKEQRQSMKSDQEDDHGICTTPVRTELPLERGKAVVPHDTVQLKKPAQTSPVTQLKDVASAKKYHGPLFDFPSFTWKPDSSMSPTVVNNNNLSLAYDVKDLLYEEGMVVLTKRRAENLKRIEGLLAVNLDRKRIRPDLVLRLQIEEKKLRLLDLQSRLREEIDQQQQEIMAMPDRPYRKFVRLCERQRVELARQVQASQRALREKQLKSVFQWRKKLLEAHWAVRDARIARNRGVGKYHERMLREFSKRNDDDRNKRMEALKNNDVDRYREMLLEQQTSLPGDAAERYAVLSSFLTQTEDYLQKLGSKITSAKNQQEVEEAARAAAAAARLQGLSDEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEDPTQIVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAIQSAIYDWIKFTGTLRLDPEDEKLRVQRNPLYQVKQYKPLNNRCMELRKTCNHPLLNYPYFHDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIIEEYLQWRRLVYRRIDGTTSLEDRETAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVRVLYMEAVVDQIPSHQKEDEHRSGGSVNLEDELAGKDRYVGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEELELFDQMDEELDWTGEMTRYDQVPKWLRASTREVNATIAALSKRPSKNTILGGGIALESSEMGSDASAKTERRRGRPKGKKHPNYKELEDENGESSEASSEERNGYSANEEGEIGEFEDDGYSGDDGAQPNNKDQMDDGPPCDAGYEFPHSSERMRNGHMIEEAGSPGSSSDSQRLTQTIFPSVSSQKFGFLSALDSKPSSISKRMIDDLEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPNLKRKRSHRARPRHAVDRIEEKSSSEMAYLQHGESAHLAIQADHKYRAQSRIDPDVKSCGEVNAAGHDRNELSIKNKRSLPSKRVTSKLRGSPKSGRLNCISDPSEDGGEQLTENGEGKPVNSRGSSTIGAKMSEIVQRKCKNVIGKFQRRIDKEGRQIVPLLTDLWKKNSGHTGGCGNNWLDIQKIDQRIDRFEYNGVLELVCDVQFMLKCAMDFYGFSLEVRSEARKVHDLFFDILKVAFPDTDFQGPRIALSFAAPTSVSALTSPRQLAGSPSRRHKLINEVENDSSPSQKQMHRGFIPSGESTRIRVHLPPKDSRTGTASISAREQIQQDNSPLLTHPGELVVCKKRRNERDKSSGKTRGASAGPVSPPSSGPAVRSPGPSSGSKDPRLSQQPAQGWTRQSSQQPNGSGGSAGWANPVKRSRSVSGKRRRSLQ 2240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 2122 2142 - -
Mibi11g1788 2240 Pfam SNF2-related domain 1000 1304 IPR000330 GO:0005524|GO:0140658
Mibi11g1788 2240 SMART helicmild6 1354 1438 IPR001650 -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 1721 1740 - -
Mibi11g1788 2240 Pfam Helicase conserved C-terminal domain 1327 1438 IPR001650 -
Mibi11g1788 2240 SMART bromo_6 1937 2046 IPR001487 GO:0005515
Mibi11g1788 2240 Gene3D - 988 1236 IPR038718 -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 2148 2164 - -
Mibi11g1788 2240 FunFam ATP-dependent helicase BRM 1237 1447 - -
Mibi11g1788 2240 SMART QLQ_2 482 519 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 557 573 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 89 133 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 196 215 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 338 383 - -
Mibi11g1788 2240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1227 IPR027417 -
Mibi11g1788 2240 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1009 1174 IPR014001 -
Mibi11g1788 2240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1231 1568 IPR027417 -
Mibi11g1788 2240 Coils Coil 1544 1564 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 2089 2103 - -
Mibi11g1788 2240 Gene3D - 799 872 - -
Mibi11g1788 2240 PANTHER SNF2/RAD54 HELICASE FAMILY 743 1791 - -
Mibi11g1788 2240 CDD SF2_C_SNF 1323 1448 - -
Mibi11g1788 2240 ProSiteProfiles QLQ domain profile. 483 519 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 1773 1801 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 196 222 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 1784 1801 - -
Mibi11g1788 2240 FunFam ATP-dependent helicase BRM 988 1236 - -
Mibi11g1788 2240 Gene3D - 1237 1446 IPR027417 -
Mibi11g1788 2240 SMART ultradead3 993 1182 IPR014001 -
Mibi11g1788 2240 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1328 1505 IPR001650 -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 403 485 - -
Mibi11g1788 2240 Coils Coil 747 771 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 2087 2240 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 1 71 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 21 68 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 534 591 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 443 485 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 1870 1931 - -
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 1618 1740 - -
Mibi11g1788 2240 FunFam Brahma1 1935 2056 - -
Mibi11g1788 2240 Pfam QLQ 484 517 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mibi11g1788 2240 MobiDBLite consensus disorder prediction 2190 2218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1788 Mibi-ChrMibi11 39331709 39344062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1788 1018 1463 RAD5 or RAD16-like Gene Family AT1G02670 26.692 8.97e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi11g1788 SNF2_N 1.6e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1788 11 39331709 39344062 Mibi11g1788 11 39331709 39344062 ECH