Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1787 ATGCAGTCTACTGGTCCTGGTAGTGGTGGGCCCGGCCGGAACCCAGGAGTGGGGCCGGCTGGGCGTGCCGCATCATCATCATCTTCCCAATCCTCTCCATCTTCAGCAGTGTCAACTCCTCACTTGGGGTTAGACACTTTGCAACAGCAGCAGCAGCAAAACCAGCAGATTGGTTCTAGGCAGTCATTGCAACAGCAACTACTTAGAAAGCCTGAAGGGAATGAACCATTTTTAGCATATCAAGCAGGGCTTCAAGGGGTGTTTGGTACCAACAATTTCTCATCTGCCAGTCCTGCACTACTGCCCCAGCAATCACGGAAATCGATTGATTTCACTCAGCACGGTTCCAGTCAGGAGGCTCAGATGAGGGGTCAAGGCATGGAGCAACAGATGGCTAATCCTGTCCATCAAGCATACCTTCAATATGCTCTGCAAGCTGCCCAACAAAAGTCTTCTTTGTCAATGCAATCACATCAGCAAGCTAAAGTGGGAATGTTAGGCTCTTCAGCTGTAAAGGATCAAGAGATGCGTATGGGAAACTTGAAAATGCAGGAACTAATTCCCTTGCAGGCAGTTAATCAAGCACAATGTTCGACTCCTAGGAACTCATCTGAACAATTCTCTCGTGGGGAAAAGCAGATTGATCAGGGACAGCATCAAGCAATGGATCACAAGAATGAGGGAAAGTCTTCAACTCAGGGACCGGCCATTGGGCACATAATGCCTGGAAATGTGATAAGACCCATGCAAGCACCAACAAATCCTCAGGGCATCCAAAATGTTGTGAACAGCCAGATGGCAGTGTCTGCCCAACTAAATGCTATGCAGGCATGGGCTCGTGAACGTAACATTGATCTATCACACCCGGCAAATGCTAACTTAATGGCACAACTCATTCCTATGATGCAGTCAAAGATGGTTTCACAACAAAAGCCAAATGAGAATAACGCTGCTCCTCAGTCATCACATGTCCCTGTTTCGAAACAGCAAGTTACTTCTCCAATGGAGAACCCAGCACATGCTAATTCATCAAGCGAATGTGCAAATGCCAGGCAGACAGTTCCTCCCAGCCACTTTGTACCACCAACAAATGCTGGTACAGCCAGTAGTGGCAGTGACGCGGCAGTGCAACAAATCAACATTCATGGCAGAGAGTCTCAAGCATCTCTGAGGCAACCTGTTGCTGCTGGAAATGGATTGCCTCCTATGCATCCCCAACAGTTTTCTCCTAACAGGAATCATGTTGCAGATCATCCTTTGAATGCTAAAAAATCACTACCAGGCCCAGATTTACCACAAGTTCAGCACATGAGGCAGTTTAACCAAACTTCTGCTCAGACTACTGGTTCCACAAATGATGGGACTTCAGGAAGCCATGTCAAACCCGTTGGGGCAGCAGCTCAGACAACTCAGCAACGACCTGGATTTACCAAACAGCAGTTGCATGTACTTAAAGCACAGATATTAGCACTCAGGAGGCTGAAGAAAGGAGAAGCTGCACTTCCTCAAGAACTTCTTCAGGCTATTGTTCCGCCACCTCTTGAGTTGCAATTGCAGCAGACTGTCCATCCTGCTGGAGGACAGAATACAGATAAATCTGCTGGGAGTACTGTGGCAGAACACACAAGGCCCATGGAGTCCAAAACAAAGGATATTCAGTCTGTCCCTGAAATAAAAGTGCAAAGTTCCTCAAAGCAGGAAGCCTCTTCTCGGGATGAAAAAACCACTGCTCCAACAGTTCACATGCAAGCTATGTCGGTTGTGGCTAAGGAAGCTGCTTCTGTTGGAAAAGAAGAGCAGCAATCAATGAAGTCAGACCAGGAGGATGATCGTGGCAATAGCAGAACTGTTAGAACTGAGTTTCCTCAGGATAGGGGAAAGGCCATCATACCAAATGACACAGTTCAACTTAAGAAACCTGCACAAACTGGCCCTGTTACCCAACCAAAGGATATGGCATCTACAAGAAAATATCATGGTCCCCTTTTTGATTTCCCTGTTTTTACCAGGAAACCGGATTCATTTGGGTCATCTGCAGCGGTAAACAACAATAATTTGTCTCTGGCCTACAATGTCAAAGATCTTCTTTATGAGGAAGGCATGGTAGTACTTACAAAGAGAAGGGCAGAAAATTTAAAAAGGATTGAAGGTTTACTGGCAGTGAACTTGGAGAGAAAACGAATTAGGCCAGATCTTGTTTTGAGGCTGCAAATCGAAGAGAAAAAGCTCCGTCTTTTAGATCTTCAGGCACGGCTGAGGGACGAGATTGATCAGCAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATACCGCAAGTTTGTGAGGCTGTGTGAGCGTCAGCGTGTTGAACTTGCCAGACAAGTGCAAGCATCTCAGCGAGCTTTACGGGAGAAACAACTCAAATCCATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACATTGGGCTGTACGTGATGCTCGAATTGCGCGCAACAGGGGTGTGGGAAAATATCATGAGAGAATGTTGAGGGAATTCTCAAAGCGTAAGGATGATGATAGGAATAAAAGGATGGAAGCCTTGAAAAATAATGATGTTGACAGATACAGGGAGATGTTGCTAGAACAGCAGACCAGCCTGCCCGGTGACGCGGCAGAGAGATATGCTGTGCTTTCATCCTTCTTAACACAGACCGAGGACTATCTACAAAAACTGGGAAGTAAAATAACAGCTGCTAAAAGTCAGCAGGAAGTGGAGGAGGCAGCAAGAGCTGCTGCAGCTGCAGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCTGCAGCTTGTGCCGGCGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTCAGCAAGTATTACAGCCTTGCTCATGCCGTGAATGAAAAGGTCATAAGGCAGCCATCTATGTTACGAGCTGGAACCTTGAGAGATTATCAGCTTGTTGGCTTGCAGTGGATGCTTTCATTGTACAACAACAAGTTGAATGGAATATTAGCAGATGAGATGGGTCTTGGTAAAACTGTGCAGGTTATGGCCTTGATTGCCTACTTGATGGAATTTAAAGGAAATTATGGCCCGCATCTTATAATTGTTCCAAATGCAGTTCTGGTGAACTGGAAGGAGGTTTGTGCTATGAAATTCAATGTCCTTGTGACAACTTACGAGTTCATCATGTATGACCGATCCAAATTGTCAAAAGTTGATTGGAAGTATATCATAATTGATGAAGCACAACGAATGAAGGATAGGGATTCAGTTCTAGCTCGCGATCTTGATAGATACCGCTGTCAGAGACGTCTTCTTCTGACAGGAACGCCATTGCAGAACGATCTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATCGAAAAGCATTTCATGATTGGTTTTCAAAACCTTTTCAAAAGGAAGATCCTACTCAAATTGTAGAAGATGATTGGCTTGAGACAGAAAAGAAAGTTATCATTATTCATCGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGTGTGGAAGATGTCGCCGTAGTTTTACGATGTAAAATGTCAGCTATTCAGAGTGCCATTTATGACTGGATCAAATCCACCGGCACCCTTCGGCTTGATCCTGAAGGTGAGAAGCTTAGAGTTCAAAGGAATCCGCTTTACCAGGTGAAGCAGTACAAAACTTTAAATAACCGATGCATGGAGCTGCGCAAGACCTGCAATCATCCACTGCTAAATTACCCATACTTCCATGACTTATCCAAAGATTTCCTTGTGAAATCTTGTGGGAAACTGTGGATCCTTGACAGGATACTTATTAAACTGCAACGAACCGGACATCGAGTTCTGCTGTTTAGTACTATGACAAAACTTCTAGACATCATAGAAGAATACCTGCAATGGAGACGGCTTGTTTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTTAACAGCCCAGGTTCAGACTGTTTCATCTTCTTGCTCAGTATTAGGGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCAGACACAGTCATCATATACGATCCTGATCCAAACCCAAAAAATGAGGAGCAGGCAGTTGCGAGAGCTCATCGCATTGGACAGACTCGAGAAGTCAGGGTGCTCTACATGGAAGCTGTTGTTGACCAGATTCCTAGCCATCAAAAAGAGGATGAACATAGAAGTGGGGGCAGTGTCAACTTGGAGGATGAACTTGCAGGTAAGGATCGTTATGTGGGATCCATTGAGAGCCTCATTAGGAACAACATTCAACAATACAAGATTGATATGGCCGATGAGGTAATCAATGCGGGACGTTTTGATCAAAGAACAACGCATGAAGAGAGACGCATGACATTGGAGACACTATTACATGACGAAGAGAGGTATCAAGAAACTGTCCACGATGTTCCGTCACTACAGGAGGTGAATCGCATGATTGCCAGGAGTGAAGAAGAACTCGAGCTGTTTGATCAAATGGATGAAGAGCTGGATTGGACTGGGGAGATGACACGGTATGATCAGGTGCCAAAGTGGCTTAGAGCCAGTACAAGGGAAGTCAATGCCACTATTGCAGCGTTATCAAAAAGGCCTTCAAAGAACACTATCTTGGGTGGTGGTATCGCTTTGGAATCCAGTGAAATGGGTTCTGATGCATCTGCCAAAACTGAAAGGAGAAGAGGCCGACCCAAGGGGAAAAAACATCCTAATTATAAAGAGTTAGAAGATGAAAATGGAGAATCCTCTGAAGCGAGTTCTGAAGAAAGAAACGGATATTCTGCAAATGAAGAAGGGGAAATAGGAGAATTCGAAGATGATGGGTATAGTGGTGATGATGGAGTTCAGCCAAATAATAAAGATCAAATGGATGATGGTCTGCCTTGTGATGCAGGATATGAATTTCCCCGTTCATCAGAAAGCATGAGAAACAGTCATATGATTGAAGAAGCTGCTTCCCCAGTATCATCCTCAGACAGTCAAAGATTGACACAGGCTGTATTTCCTTCAATTTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGATACTAAGCCAAGTTCCATTTCCAAGAGGATGGTAGATGATTTAGAGGAAGGGGAAATTGCGGTATCTGGTGATTCTCACATGGATCACCAGCAATCTGGCAGTTGGATTCATGATCGTGATGAAGGAGAGGATGAGCAAGTTTTGCAACCCAAACTTAAACGTAAACGCAGTCACCGTGCTCGACCGCGTCATGCTTCAGACAGGGTTGAGGAAAAGTCTAGCAGTGAGATGGCATCTCTTCAACGTGGAGAATCAGCTCAATTGACCATCCAAACAGACCATAAATATCGTGCCCAATCACGGATTGACCCTGATGTAAAATCATGTGGAGAAGTTAATGCTGCCGGGCATGATCGGAATGAATTGTCGATAAAAAATAAGCGAAGTTTGCCTTCAAAGAGAGTAACTTCTAAATTGCGTGGTTCACCTAAATCTGGTAGATTGAATTGCATTTCTGCCCCTTCGGAAGATGGTGGTGAAGAACTCACAGAAAAGTGGGAGGGCAAGCCTATCAATTCAAGTGGGTCTTCAGCTCTTGGTGCTAGAATGTCTGAATTAGTCCAGAGAAAGTGCAAGAATGTAATTGGTAAGTTTCAAAGGAGAATAGATAAGGAAGGTCGTCAAATTGTACCTTTGCTTACTGAATTGTGGAAGAAGAATTCTGGACACACTGGTGGCAGTGGGAATAATTTGCTGGACATACAGAAGATTGATCAGCGAACTGATAGGTTTGAATATAATGGAGTATTGGAGCTTGTGTGTGATGTGCAGTCCATGTTGAAGTGTGCAATGGATTTTTATGGGTTCTCTCATGAGGTAAGGTCTGAAGCAAGGAAGGTCCATGATCTCTTCTTTGATATATTGAAAATTGCATTTCCTGATACGGACTTCCAAGGGCCAAGAATTGCACTTTCTTTTGCTGCACCGACTTCCGTCAGTACTCTAACATCCCCAAGGCACTTGGCTGGGAGCCAAAGCAGAAGACACAAGCTGATAAATGAGGTGGAAAATAATTCAAGCCCTTCACAGAAGCCACTGCATGGGGGCTTTATTCCGAGTGGTGAAAGCACCCGGATCAGAGTGCATCTGCCACCGAAGGATTCAAGAACCGGAACAGCTTCCGGCAGTGCCAGGGAGCAAATTCAGCAGGATGACTCTCTGCTGCTCACTCATCCAGGTGAACTGGTAGTATGCAAGAAGAGAAGAAATGAGAGGGACAAATCCTCAGGTAAGTCTAGGGGTGGCTCTGCTGGTCCTGTTTCACCGCCTAGCTCCGGTCCTGCTATAAGAAGTCCTGGACCAAGTTCAGGTTCTAAGGATGCTAGACTAGGTCAACAGCCTGCTCAAGGGTGGATGCGTCAGTCATCTCAACAACCAAACGGGTCTGGTGGATCAGCTGGTTGGGCAAATCCCGTGAAGCGGTCGAGGACGGTTTCTGGGAAAAGGAGACGGAGCCTTCAATAG 6588 0.4519 MQSTGPGSGGPGRNPGVGPAGRAASSSSSQSSPSSAVSTPHLGLDTLQQQQQQNQQIGSRQSLQQQLLRKPEGNEPFLAYQAGLQGVFGTNNFSSASPALLPQQSRKSIDFTQHGSSQEAQMRGQGMEQQMANPVHQAYLQYALQAAQQKSSLSMQSHQQAKVGMLGSSAVKDQEMRMGNLKMQELIPLQAVNQAQCSTPRNSSEQFSRGEKQIDQGQHQAMDHKNEGKSSTQGPAIGHIMPGNVIRPMQAPTNPQGIQNVVNSQMAVSAQLNAMQAWARERNIDLSHPANANLMAQLIPMMQSKMVSQQKPNENNAAPQSSHVPVSKQQVTSPMENPAHANSSSECANARQTVPPSHFVPPTNAGTASSGSDAAVQQINIHGRESQASLRQPVAAGNGLPPMHPQQFSPNRNHVADHPLNAKKSLPGPDLPQVQHMRQFNQTSAQTTGSTNDGTSGSHVKPVGAAAQTTQQRPGFTKQQLHVLKAQILALRRLKKGEAALPQELLQAIVPPPLELQLQQTVHPAGGQNTDKSAGSTVAEHTRPMESKTKDIQSVPEIKVQSSSKQEASSRDEKTTAPTVHMQAMSVVAKEAASVGKEEQQSMKSDQEDDRGNSRTVRTEFPQDRGKAIIPNDTVQLKKPAQTGPVTQPKDMASTRKYHGPLFDFPVFTRKPDSFGSSAAVNNNNLSLAYNVKDLLYEEGMVVLTKRRAENLKRIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRVELARQVQASQRALREKQLKSIFQWRKKLLEAHWAVRDARIARNRGVGKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSLPGDAAERYAVLSSFLTQTEDYLQKLGSKITAAKSQQEVEEAARAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEDPTQIVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVAVVLRCKMSAIQSAIYDWIKSTGTLRLDPEGEKLRVQRNPLYQVKQYKTLNNRCMELRKTCNHPLLNYPYFHDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIIEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVRVLYMEAVVDQIPSHQKEDEHRSGGSVNLEDELAGKDRYVGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEELELFDQMDEELDWTGEMTRYDQVPKWLRASTREVNATIAALSKRPSKNTILGGGIALESSEMGSDASAKTERRRGRPKGKKHPNYKELEDENGESSEASSEERNGYSANEEGEIGEFEDDGYSGDDGVQPNNKDQMDDGLPCDAGYEFPRSSESMRNSHMIEEAASPVSSSDSQRLTQAVFPSISSQKFGSLSALDTKPSSISKRMVDDLEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPKLKRKRSHRARPRHASDRVEEKSSSEMASLQRGESAQLTIQTDHKYRAQSRIDPDVKSCGEVNAAGHDRNELSIKNKRSLPSKRVTSKLRGSPKSGRLNCISAPSEDGGEELTEKWEGKPINSSGSSALGARMSELVQRKCKNVIGKFQRRIDKEGRQIVPLLTELWKKNSGHTGGSGNNLLDIQKIDQRTDRFEYNGVLELVCDVQSMLKCAMDFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFQGPRIALSFAAPTSVSTLTSPRHLAGSQSRRHKLINEVENNSSPSQKPLHGGFIPSGESTRIRVHLPPKDSRTGTASGSAREQIQQDDSLLLTHPGELVVCKKRRNERDKSSGKSRGGSAGPVSPPSSGPAIRSPGPSSGSKDARLGQQPAQGWMRQSSQQPNGSGGSAGWANPVKRSRTVSGKRRRSLQ 2195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1573 1688 - -
Mibi11g1787 2195 Pfam SNF2-related domain 991 1053 IPR000330 GO:0005524|GO:0140658
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1739 1759 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 523 542 - -
Mibi11g1787 2195 PANTHER SNF2/RAD54 HELICASE FAMILY 693 1711 - -
Mibi11g1787 2195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 969 1190 IPR027417 -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 394 474 - -
Mibi11g1787 2195 Gene3D - 1057 1189 IPR038718 -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 21 67 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1694 1712 - -
Mibi11g1787 2195 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1283 1460 IPR001650 -
Mibi11g1787 2195 SUPERFAMILY Bromodomain 1941 2002 IPR036427 GO:0005515
Mibi11g1787 2195 Gene3D - 1890 2009 IPR036427 GO:0005515
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1663 1688 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 2146 2173 - -
Mibi11g1787 2195 Pfam Helicase conserved C-terminal domain 1282 1393 IPR001650 -
Mibi11g1787 2195 Gene3D - 957 1056 IPR038718 -
Mibi11g1787 2195 Gene3D - 1194 1514 IPR027417 -
Mibi11g1787 2195 FunFam Brahma1 1890 2011 - -
Mibi11g1787 2195 Coils Coil 1499 1519 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1821 1885 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 197 234 - -
Mibi11g1787 2195 Pfam QLQ 476 509 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mibi11g1787 2195 Gene3D - 790 863 - -
Mibi11g1787 2195 ProSiteProfiles QLQ domain profile. 475 511 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 306 375 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 2103 2119 - -
Mibi11g1787 2195 CDD SF2_C_SNF 1278 1403 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 435 474 - -
Mibi11g1787 2195 SMART bromo_6 1892 2001 IPR001487 GO:0005515
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 2043 2195 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1771 1785 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 523 621 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 110 130 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1821 1836 - -
Mibi11g1787 2195 SMART QLQ_2 474 511 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mibi11g1787 2195 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1000 1137 IPR014001 -
Mibi11g1787 2195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1197 1523 IPR027417 -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1786 1803 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1694 1713 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1 67 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 601 621 - -
Mibi11g1787 2195 Pfam SNF2-related domain 1057 1259 IPR000330 GO:0005524|GO:0140658
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 2077 2095 - -
Mibi11g1787 2195 Coils Coil 738 762 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 1728 1806 - -
Mibi11g1787 2195 SMART ultradead3 984 1145 IPR014001 -
Mibi11g1787 2195 FunFam ATP-dependent helicase BRM 1192 1402 - -
Mibi11g1787 2195 MobiDBLite consensus disorder prediction 197 215 - -
Mibi11g1787 2195 SMART helicmild6 1309 1393 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1787 Mibi-ChrMibi11 39313512 39326784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1787 1009 1418 RAD5 or RAD16-like Gene Family AT1G02670 25.338 5.39e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi11g1787 SNF2_N 1.8e-33 CL0023