LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi11g1738	ATGGAGGAAAACCACCTCGTGGTGGTGGACCCACCACTGCTTCCATCACCACCAGATCATCAAAACCCTACCTTCGTCTTCCCGGCCTCACTGCCTTCGCTGGAGAAGCCGATGGACCCACAAGGGTTGCTTGACATTGACTGGAATACCATTTTCTCATCAGGTCAAAGCAACTTGCAGCCTTCTGGGGTTATTCATCATCATCAGGACACCATTAATAACAAGCCAATGATGGAAGGTGATGGTGCTTTATCTTCAATGACCTTAATGGGTAACATTAATAATGGAGGTCATCGTAATGATATGGAAAAGGATAACATTAGTAATAATAATAAAGAGAAAAGAAGAGGAGGTAGGGTGATGAAGAAGACGACCACGAGGCCTAGGTTTGCGTTTCAGACAAGAAGTGCTGATGATATTCTTGATGATGGTTATCGTTGGAGGAAGTATGGTCAGAAAGCTGTCAAGAATAGCATTTATCCCAGGAGCTATTACAGATGCACACATCACACATGCAATGTGAAGAAACAGGTGCAGAGGTTATCAAAGGATACAAGCATAGTGGTGACAACTTACGAGGGAATTCACAACCATCCTTGTGAGAAGCTCATGGAAACCCTCACTCCTCTCCTCAAGCAAATCCAATTCCTCACTAGCCTCTAA	663	0.4419	MEENHLVVVDPPLLPSPPDHQNPTFVFPASLPSLEKPMDPQGLLDIDWNTIFSSGQSNLQPSGVIHHHQDTINNKPMMEGDGALSSMTLMGNINNGGHRNDMEKDNISNNNKEKRRGGRVMKKTTTRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLTSL	220

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi11g1738	220	MobiDBLite	consensus disorder prediction	96	123	-	-
	Mibi11g1738	220	MobiDBLite	consensus disorder prediction	98	115	-	-
	Mibi11g1738	220	SUPERFAMILY	WRKY DNA-binding domain	134	200	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi11g1738	220	Pfam	WRKY DNA -binding domain	142	199	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi11g1738	220	Gene3D	WRKY domain	126	200	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi11g1738	220	ProSiteProfiles	WRKY domain profile.	136	201	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi11g1738	220	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	95	202	IPR044810	GO:0003700
	Mibi11g1738	220	SMART	WRKY_cls	141	200	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi11g1738	220	FunFam	WRKY transcription factor 57	127	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi11g1738	Mibi-ChrMibi11	38431789	38434958	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi11g1738	103	220	WRKY Transcription Factor Family	AT5G41570	66.949	3.45e-55	172

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mibi11g1738		WRKY	6e-25	CL0274