Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1676 ATGCCCACAAAACTCTTCTCCCAATTCCACCTTATCCAAGCTTCTTCCTTCGCTCGTTTCCCCTCCATGAAGCTCGGAGCCTCCATTTCAACGTCCCGTACAGTCCCCATCTTCTCTCGTGTCTTCCCCTTCAGGCTCAAGTACCTGGGGTTGGAAACTCGTGCTGTACGGAACGATTCTCTATTACTCGGTTCACGGCGATTCTCGACTCGGTCTTTCCCTAGGAGGACTGAGTCGAGGTCTGAGTTCAATAGGGGGAATAGGGACGCAGAAAAGGTTAGGCTTTCTAATTCTAAGAGCTTGATTGAGGATGAGGCTGAACTTAGTGATTGGGTTGATGACTTGAAAACTAATTCTTTTCGGGGTCGACTCACTAGTGAAGAGGATGATGACTCGGATAGGGAAATGGGTAGGAATGGAGGGAGGAATAGTCATAGAACATTGAGTAGGGAGAGTGGTTTGAATAGATTTGGTGAGTCAACTCGGAGGAGAACTCGGGATTCGTTTGAGTCGTTTTCAGGGAATTCTAGAATGAGCAGGAGATTTGAGGATGATGATGGTGATGATGGTGGTGAGGGGGGGAGTAAATTTCAGTCTAGGAGAAGTAGAGAATCTCTGTCAATGAGAGGGAGTAGGGGTAGTGGTTTGAACAGAGTTGGTGAGTCAACTCGGAGGGGAACTCGGGATTCATTTGATTCGTTTTCACGGAATTCTCGTGTGAGCCGGAGATTTGAAGATGATGATGATGGGGGGAATAAATTTCAGTCTAGGAGAGGTGCTAGAGTGTATGAAGGTAGGAATGTGAATTCTCTATTGGGGAAGAGAAGTGGTGAGGAGTTGAGGAGAGGGAGGAGGGATGGAAGGAGGAAGTCGCATTCGATGAGTGAGGATGATGATGGTGATGAAGATGAACTTGGGGCTAAGAAGTTCATGGGACGCTTTGGAGATCTTATTAGTGAAGAAGATAGTGACTCTGAAGATACTGTGGATGAAGATGATGATGATGATGATGATTCTCAGCTGAATGGAGAAAAGGGGCTGAAGAAGAGCAGTCCAACAAGAGGTTCTCCTGAGAGATCTGACAATTATTTGAGTGAGACCAGATTTGATCAATGTTCAATCTCACCTCTGTCCTTGAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACGCTTCCAGTAATTCTCAGAGGTAAAGATGTCCTAGCCAAGGCTAAAACGGGCACCGGAAAAACTGTTGCCTTTTTGCTTCCATCTATTGAAGTTATTGCAAAGTCACCTCCACTGGATCGTGATCAAAAGCGACCTCCAATCCTTGTGCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTGCTGAAGTACCACCCTTCCATTGGTGTTCAAGTTGTGATCGGAGGGACAAGGCTTGCTCTGGAACAGAAACGCATGCAAGCTAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAAAGATCACATTGAGAATACAGCAGGCTTTGCAACTCGGCTGAGGGGTGTGAAGGTCCTTGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATCGAGAGGATAATTGCTGCAGTTCCAAGTCAAAGACAAACTCTTTTGTTTTCTGCCACCGTTCCTGAAGAGGTCCGTCAAGTCTGCCATATTGCATTGAGAAGGGATCATGAATTTATCAACACAGTTGAAGAGGGTAGTGAGGAGACACATTCACAGGTTCGACAGATGCATTTAGTTGCACCATTAGACAAACATTTCTCCTTGCTCTACACTCTTCTAAAGGAGCATATTGCAGATGATGTTGACTATAAGGTTCTTGTCTTCTGCACAACTGCCATGGTCACAAGACTTGTTGCTGACCTTCTCGGTGAGTTGAATTTGAATGTGAGAGAAATTCATTCAAGGAAGCCTCAGAGCTATAGAACTCGGGTCTCGGATGAGTTTCGGAAGTCAAAGGGCCTAATCCTTGTAACTTCAGATGTATCTGCCCGTGGAGTTGATTATCCAGATGTTACTCTGGTTATACAGTTGGGTTTGCCAGCGGATAGAGAACAGTATATCCACCGACTGGGTAGAACAGGGCGGAAAGGTAAAGAAGGACAAGGCATAGTGTTGCTAGCTCCTTGGGAAGAATTCTTTTTATCCACCGTAAAGGATTTGCCTATTACAAAAGCTCAAGTACCTTCAGTTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCCTTGTCCCATGTGGAGATGAAGCACAAAGAAGCAGCATATCAGGCCTGGCTTGGTTACTATAACTCAAACAAGAAAGTGGGGAAAGACAAGTATAGGCTAGTGGAGCTTGCAAATGAATTCAGTAGAACCATGGGGCTTGATAACCCTCCAGCAATTCCAAAGCTAGTCCTTGGCAAGATGGGCCTCAGAAATATTCCTGGTTTACGTTCCAAATAG 2508 0.4561 MPTKLFSQFHLIQASSFARFPSMKLGASISTSRTVPIFSRVFPFRLKYLGLETRAVRNDSLLLGSRRFSTRSFPRRTESRSEFNRGNRDAEKVRLSNSKSLIEDEAELSDWVDDLKTNSFRGRLTSEEDDDSDREMGRNGGRNSHRTLSRESGLNRFGESTRRRTRDSFESFSGNSRMSRRFEDDDGDDGGEGGSKFQSRRSRESLSMRGSRGSGLNRVGESTRRGTRDSFDSFSRNSRVSRRFEDDDDGGNKFQSRRGARVYEGRNVNSLLGKRSGEELRRGRRDGRRKSHSMSEDDDGDEDELGAKKFMGRFGDLISEEDSDSEDTVDEDDDDDDDSQLNGEKGLKKSSPTRGSPERSDNYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPSIEVIAKSPPLDRDQKRPPILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLKDHIENTAGFATRLRGVKVLVLDEADHLLDMGFRKDIERIIAAVPSQRQTLLFSATVPEEVRQVCHIALRRDHEFINTVEEGSEETHSQVRQMHLVAPLDKHFSLLYTLLKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQLGLPADREQYIHRLGRTGRKGKEGQGIVLLAPWEEFFLSTVKDLPITKAQVPSVDPDTKKKVERALSHVEMKHKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRTMGLDNPPAIPKLVLGKMGLRNIPGLRSK 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1676 835 MobiDBLite consensus disorder prediction 304 319 - -
Mibi11g1676 835 MobiDBLite consensus disorder prediction 320 340 - -
Mibi11g1676 835 MobiDBLite consensus disorder prediction 156 170 - -
Mibi11g1676 835 MobiDBLite consensus disorder prediction 351 365 - -
Mibi11g1676 835 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 398 581 IPR014001 -
Mibi11g1676 835 Gene3D - 590 813 IPR027417 -
Mibi11g1676 835 MobiDBLite consensus disorder prediction 275 296 - -
Mibi11g1676 835 SMART helicmild6 639 720 IPR001650 -
Mibi11g1676 835 MobiDBLite consensus disorder prediction 177 207 - -
Mibi11g1676 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 735 IPR027417 -
Mibi11g1676 835 Pfam DEAD/DEAH box helicase 392 569 IPR011545 GO:0003676|GO:0005524
Mibi11g1676 835 PANTHER RNA HELICASE 337 765 - -
Mibi11g1676 835 SMART ultradead3 386 599 IPR014001 -
Mibi11g1676 835 MobiDBLite consensus disorder prediction 122 145 - -
Mibi11g1676 835 CDD SF2_C_DEAD 596 729 - -
Mibi11g1676 835 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 615 766 IPR001650 -
Mibi11g1676 835 MobiDBLite consensus disorder prediction 222 255 - -
Mibi11g1676 835 CDD DEADc_MSS116 374 583 - -
Mibi11g1676 835 Pfam Helicase conserved C-terminal domain 613 720 IPR001650 -
Mibi11g1676 835 Gene3D - 320 582 IPR027417 -
Mibi11g1676 835 MobiDBLite consensus disorder prediction 122 367 - -
Mibi11g1676 835 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 367 395 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1676 Mibi-ChrMibi11 37650268 37655488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1676 358 748 Eukaryotic Initiation Factors Gene Family AT3G19760 29.250 2.54e-47 172