Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1659 ATGTTTTTGGGTGATAGAATGGAAGCAAGTAGCCTTGATAGTACTGTATCATCCTTGACTATGGATGATGATGAGCATATTCCTCATCAGTTTTCTTCGATCACGAAGCTTCATAACAATGGTCCTGGCACTACCAGCGTCCATGAACTGCTTGAATGCCCTGTTTGCACAAGTTCAATGTATCCTCCCATCCATCAGTGTCATAATGGGCATACACTTTGTTCAACTTGTAAGACAAGGGTACACAATCGATGTCCGACCTGTAGGCAGGAACTTGGGGATATAAGGTGTCTGGCTCTGGAGAAAATAGCGGAATCACTTGAACTGCCTTGCAGATACGGCTCACTTGGTTGTCCAGAGATATTTCCCTATTATAGCAAACTCAAACACGAGTCTATCTGTAACTTCAGACCATACAACTGCCCCTATGCTGGGTCAGACTGTTCTGTTGTTGGGGATATTCCTTACCTTGTTGCCCATTTACGGGATGACCATCGGGTCGATATGCACTCGGGATGCACATTTAACCATCGCTATGTCAAGTCTAATCCCGTGGAAGTAGAAAATGCTACATGGATGTTAACTGTCTTCCACTGTTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCCTTCCAGCTTGGTGTGGCTCCTGTTTACATGGCATTCCTCCGGTTCATGGGCGACGAAAGAGAAGCTCGAAGCTACTGCTACAGTCTGGAGATAGGAGGGAATGGACGTAAACAAATATGGGAGGGAAACCCAAGAAGCATAAGAGACAGCCATAAGAAAGTTAGAGACAGCCATGATGGTCTCATTGTGTACAGAAACATGGCACTTTTCTTCTCAGGTGGGGATAGGAAAGAGTTGAAGCTACGAGTCACTGGAAGGATCTGGAAAGAACAGCAAAATCCTGAAAGCGGAGTGTGCATACCCAATCTCTGTAGCTAA 948 0.4515 MFLGDRMEASSLDSTVSSLTMDDDEHIPHQFSSITKLHNNGPGTTSVHELLECPVCTSSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYGSLGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPVEVENATWMLTVFHCFGQYFCLHFEAFQLGVAPVYMAFLRFMGDEREARSYCYSLEIGGNGRKQIWEGNPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPESGVCIPNLCS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1659 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
Mibi11g1659 315 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Mibi11g1659 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 105 IPR013083 -
Mibi11g1659 315 SUPERFAMILY RING/U-box 44 92 - -
Mibi11g1659 315 CDD Sina 167 295 - -
Mibi11g1659 315 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Mibi11g1659 315 SUPERFAMILY TRAF domain-like 106 298 - -
Mibi11g1659 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 294 IPR008974 GO:0005515
Mibi11g1659 315 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mibi11g1659 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 161 IPR013083 -
Mibi11g1659 315 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Mibi11g1659 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 36 300 - -
Mibi11g1659 315 CDD RING-HC_SIAHs 51 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1659 Mibi-ChrMibi11 37434101 37436639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1659 33 301 C3H Transcription Factor Family AT2G41980 75.465 1.97e-156 437