Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1649 ATGTGGGTTTTTCGAAAGTTCTCTCTCACTGGCTGGGTTCTTATCATACTCAAAGGTGAAGTATTCAATAACAAATCTAATTTGAAAATTTCTAAATTTGTTTCTCTTCTTCTGGGTGTTCATTTTTTTTTTATATATATATTTTGTGATGTTGAACAGATGAAGATTGAGGTGGGTCTTGGAATCGGAACTATGTTGTGGAGCGAAGACGAACGAGACATGGTGGCTTCAGTTTTAGGCGCACGAGCTTTGGATTACTTGGTGAATCACTCTGTTTCTAACGAGAATCTGTTAATGGCGGTTGTAACAGACGGGAATCTCCAGAAGAAGCTATCAGATCTCGTGGAGCGTCCAAACATATCGAATTTCACCTGGAATTACGCCATTTTCTGGCAAATTTCTCAGTCAAAATCTGGCGAATGGGTTTTAGGTTGGGGAGATGGGTGTTGCAGAGAACCAGAAGAAGAAGAACAACAACATCATCAAAACGACGTCGTTCAACTTATGAGGAAGAAGGTTTTGCAGAAGCTTCATACAACGTTTGGTGGTTCTGAAGAGGACAATTATGTGTATGGATTAGACAGAGTTACTGATACAGAGTTGTTCTTTTTAGCTTCTATGTATTTCTCTTTCCCTCATGGCCATGGTGGCCCAGGTAAGTGCCTAGCCTCTGGTAAACATTCATGGCTAACAGATGCACAGAAATCAACAATTGATTACTGTGTGAGATCTTTTCTGGTTAAATCGGCTAAAATCCAGACCGTTGTTTTGATCCCTACTGATATGGGAGTTGTGGAATTGGGTTCTACGAAGATGGTGAAGGAGAATTCAGAACTGTTGCAGGCAATCAAATCTGAATTCTCCATCGAATCTGCATTCCAAAGGGCAAAATCGTCATTTCCACCTCCACCGGCGGCGGCAAAACCGTCAATCCCGCCGGCGCCGGAGCTGACAATGTTTCCGGTTTCTTCGACCGTTGTTGTCCCGAAGATTTTCGGGCAGGATTTGAACAAGACGACGGCGAACCCGGCGGTTCGAAGCGGACAATTTCGAGAGAAGCTCGCAGTTAGGAAGTTGGAGGATAAGCCATCATGGTTAGGAGGTGGTAATTCCAATAATTCCAATGGGGTTTATCAACCCCATTGTAATGGTGTTAATGTTAACAACAATGGTGTAATAAGGCAAGCCAACATTCCTGTTGAAACTTATGTTCCCAACAACAACAACAACAACAATAATCAACAACACCCACAAAGGAAAGGGCCAATCTTGCAGATTGATTTCTCAGGAGCTACTAATAATAATTCCGTGTCTGTTGAAACACCAAACGGCGGCTCCGGCGAATTGGGGCTGCCGGAGGCGGCGGCGGAGGAGAGGCGGCCGAGGAAGCGAGGAAGGAAGCCGGCGAATGGGAGGGAAGAACCTTTGAACCATGTGGAAGCGGAGAGGCAGAGGCGTGAGAAGTTGAACCAGAGGTTCTATGCTTTAAGAGCTGTTGTGCCTAATATATCCAAGATGGATAAAGCATCTTTGTTAGGTGATGCCATTTCTTACATCAATGAGCTTCAGGAGAAAGTGAAGTTGATGGAATCTGAGAGAGATAACAGACTTGGATGCAGCACTTCCTCATCAATGGAGCATTCACAACAACAACAATCTCCTCCTCCTCAAGTGGAAGTCGTAGTTCGTGGTAAGGATGAGGTGGTTGTGAGGGTGATATCTCCTATGAATTCTCACCCGGTTTCATCAGTGATAAGGGCATTGAAAGAGGCACAAGTGAGTGTTGTTGATTCTAAACTGGGTATCACTGCGAATGAAACTGTGTTTCATACATTTGTGGTTAAGCCTCAAGGACCTGATGATGATCAGCAGCTCACAAAGGAGAAGTTGATTGCTGCATTTTCCCGCCAATCCAATTCATTGACTTCTGCCCAATTAGCATAG 1944 0.4414 MWVFRKFSLTGWVLIILKGEVFNNKSNLKISKFVSLLLGVHFFFIYIFCDVEQMKIEVGLGIGTMLWSEDERDMVASVLGARALDYLVNHSVSNENLLMAVVTDGNLQKKLSDLVERPNISNFTWNYAIFWQISQSKSGEWVLGWGDGCCREPEEEEQQHHQNDVVQLMRKKVLQKLHTTFGGSEEDNYVYGLDRVTDTELFFLASMYFSFPHGHGGPGKCLASGKHSWLTDAQKSTIDYCVRSFLVKSAKIQTVVLIPTDMGVVELGSTKMVKENSELLQAIKSEFSIESAFQRAKSSFPPPPAAAKPSIPPAPELTMFPVSSTVVVPKIFGQDLNKTTANPAVRSGQFREKLAVRKLEDKPSWLGGGNSNNSNGVYQPHCNGVNVNNNGVIRQANIPVETYVPNNNNNNNNQQHPQRKGPILQIDFSGATNNNSVSVETPNGGSGELGLPEAAAEERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYINELQEKVKLMESERDNRLGCSTSSSMEHSQQQQSPPPQVEVVVRGKDEVVVRVISPMNSHPVSSVIRALKEAQVSVVDSKLGITANETVFHTFVVKPQGPDDDQQLTKEKLIAAFSRQSNSLTSAQLA 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1649 647 MobiDBLite consensus disorder prediction 426 484 - -
Mibi11g1649 647 CDD bHLH_AtAIB_like 470 533 - -
Mibi11g1649 647 MobiDBLite consensus disorder prediction 535 557 - -
Mibi11g1649 647 SMART finulus 479 528 IPR011598 GO:0046983
Mibi11g1649 647 FunFam Transcription factor bHLH13 466 537 - -
Mibi11g1649 647 MobiDBLite consensus disorder prediction 533 557 - -
Mibi11g1649 647 MobiDBLite consensus disorder prediction 427 443 - -
Mibi11g1649 647 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 107 287 IPR025610 -
Mibi11g1649 647 Gene3D - 466 536 IPR036638 GO:0046983
Mibi11g1649 647 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 473 522 IPR011598 GO:0046983
Mibi11g1649 647 MobiDBLite consensus disorder prediction 453 484 - -
Mibi11g1649 647 Pfam Helix-loop-helix DNA-binding domain 477 523 IPR011598 GO:0046983
Mibi11g1649 647 PANTHER MYC 95 633 IPR045084 GO:0003700|GO:0006355
Mibi11g1649 647 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 476 545 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1649 Mibi-ChrMibi11 37340833 37342776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1649 60 643 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.042 8.95e-177 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi11g1649 bHLH-MYC_N 9.1e-57 CL0161