Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1646 ATGGCACATCTGGGGTGTAATCTCAGGGGCCCGACGACTTCCCCGGCTGCGGATACAGGTTTGGAAGATGATGATCTGTATACAGAGTTATGGAAGTTATGTGCTGGGCCTCTGGTGGATGTTCCTCATGCTGGGGAGAGAGTTTTTTACTTCCCTCAAGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAATTGAACCAACAAATTCCCCATTTCAACATTTCATCTAAGATTCTATGCCGTGTCATGCACATTCAGTTATTGGCGGAACCAGACACTGATGAAGTTTATGCTCGTATTACTTTGCTTCCAGAATCAGATCAAACTGAGCCTGCCAGCTCTGATCCAAGTCCACCAGAGACTCGGACGCAGGCTTTTCATTCATTTTGCAAAATTTTAACAGCATCTGATACTAGCACTCATGGAGGATTTTCAGTTCTGCGGAAGCATGCTAATGAGTGCTTGCCTCAATTGGACATGACCCAAGCAACCCCTACTCAGGAGTTAGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAATTTAAGCATATATTCAGAGGTCAACCAAGGCGACATTTGCTTACAACTGGCTGGAGTACATTTGTCACTTCCAAAAGATTGGTAGCTGGAGATGCTTTCGTGTTTTTGAGGGGAGAGATTGGGGGAGAACTGAGAGTTGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCAATGCCTTCGTCTGTGATATCAAGCCAGAGCATGCACCTTGGAGTGCTTGCCACTGCCTCCCATGCTGTTGCCACCCGCACCATGTTTGTGGTTTACTACAAACCAAGGACTAGACAGTACATAATCGGTTTAAACAAATATCTGGCGGCGATCAACAATAAGTTCACAGTTGGCATGCGTTTCAAGATGAGATTTGAAGGAGATGATTCACCTGAGAGAAGGTTTTCAGGAACTATTGTTGGTGTTGGCGATTTATCTACAGAGTGGCCAGACTCAAAGTGGCGGTCATTGAAGGTACAATGGGATGAACCTGCTACCATCCCAAGGCCAGAGAGGGTATCTCCTTGGGAGATAGAACCATTTGTAGCTTCTGCACCTGTAAATCTAGTTCAACCAGCTGTAAAGAGCAAAAGATCTCGGCCTGCTGATGTTCCATCTTCTGAAATGGTTTCTAATTCAGCGGCTTCAGCTTTCTGGTATCATGGGTCATCGCAGTCCCATGAACTTGCTCAATTAGGTGGTGCCACAGAACCCCAAAGCAACGAAAACCAGATTTTATGGAATGCAAGGCAGAACAATATAAATGGCAGTGCCATGAACAACAATAGCTCCTGCAACTCTAGAGCCCGGGTCGAAGCAGCATGGCCGTCATCACATTTGAACATCTCTTCAAACTGTTTTCCTGAGCCCAAAAACAATAAAGCTGTTGCAGTTCAATCTTCTGTCTCTGGTCATCCTCCTGTCTCCTCCTGGCCACATGATCAAGTTGAGAATGGGAAGAAATGTGAGAATCCGGTTGGGTGCCGGCTATTTGGTGTTAATTTGACCAAGAACTCTAACAATGTTGCTCCTCAAGAGAAAGAGTTAAGAGGTTGCACTGCTAGTCCCAGTGGTTCCAAAGAATCTATTCCTGTTGTTGCCTGTGAAACTAAGACAAGTCAGAATCCCAATTATTCAGTGTCCAAAAAGGAGCAGAAGCAAGAAACGACCAATGTGTCACCAAATAATGAGAGGCAGAACAAGCAGGCATCTTTACCATCCACCAGGACTCGCACAAAGGTACAAATGCAAGGAGTGGCTGTTGGTCGTGCTGTTGACTTGACTATGTTGGATGGCTACGAGAGTCTGATCGAAGAGCTAGAGAAGTTGTTCGACATTAAAGGAGAGCTTCGTACACAGAACAAATGGGCGGTTACTTTCACAGATGATGAGAATGACAGGATGCTCGTGGGTGATGATCCGTGGCCAGAGTTTTGTAAAATGGTGAAGAAGATTATCATATATTCAAGCGAGGAAGTGAAGAAAATGAATGCAATCTGCCCAGTTCCTGCATCTTCATCAGAGGATGATGAAACTCTGATCACTGGGAATTCACAGAATAAGGATGAAAGTCAGTAA 2115 0.4544 MAHLGCNLRGPTTSPAADTGLEDDDLYTELWKLCAGPLVDVPHAGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVMHIQLLAEPDTDEVYARITLLPESDQTEPASSDPSPPETRTQAFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGEIGGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLAAINNKFTVGMRFKMRFEGDDSPERRFSGTIVGVGDLSTEWPDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASAPVNLVQPAVKSKRSRPADVPSSEMVSNSAASAFWYHGSSQSHELAQLGGATEPQSNENQILWNARQNNINGSAMNNNSSCNSRARVEAAWPSSHLNISSNCFPEPKNNKAVAVQSSVSGHPPVSSWPHDQVENGKKCENPVGCRLFGVNLTKNSNNVAPQEKELRGCTASPSGSKESIPVVACETKTSQNPNYSVSKKEQKQETTNVSPNNERQNKQASLPSTRTRTKVQMQGVAVGRAVDLTMLDGYESLIEELEKLFDIKGELRTQNKWAVTFTDDENDRMLVGDDPWPEFCKMVKKIIIYSSEEVKKMNAICPVPASSSEDDETLITGNSQNKDESQ 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1646 704 Pfam AUX/IAA family 468 624 IPR033389 -
Mibi11g1646 704 Pfam AUX/IAA family 632 671 IPR033389 -
Mibi11g1646 704 Gene3D - 293 365 - -
Mibi11g1646 704 MobiDBLite consensus disorder prediction 521 593 - -
Mibi11g1646 704 Gene3D - 128 233 IPR015300 -
Mibi11g1646 704 ProSiteProfiles B3 DNA-binding domain profile. 131 234 IPR003340 GO:0003677
Mibi11g1646 704 FunFam Auxin response factor 583 676 - -
Mibi11g1646 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mibi11g1646 704 MobiDBLite consensus disorder prediction 1 20 - -
Mibi11g1646 704 Pfam Auxin response factor 258 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi11g1646 704 Gene3D - 584 676 - -
Mibi11g1646 704 MobiDBLite consensus disorder prediction 687 704 - -
Mibi11g1646 704 SUPERFAMILY DNA-binding pseudobarrel domain 122 261 IPR015300 -
Mibi11g1646 704 MobiDBLite consensus disorder prediction 534 593 - -
Mibi11g1646 704 MobiDBLite consensus disorder prediction 108 125 - -
Mibi11g1646 704 MobiDBLite consensus disorder prediction 105 125 - -
Mibi11g1646 704 MobiDBLite consensus disorder prediction 681 704 - -
Mibi11g1646 704 FunFam Auxin response factor 293 364 - -
Mibi11g1646 704 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Mibi11g1646 704 FunFam Auxin response factor 129 234 - -
Mibi11g1646 704 ProSiteProfiles PB1 domain profile. 588 669 IPR000270 GO:0005515
Mibi11g1646 704 SMART B3_2 131 234 IPR003340 GO:0003677
Mibi11g1646 704 CDD B3_DNA 129 232 IPR003340 GO:0003677
Mibi11g1646 704 SUPERFAMILY CAD & PB1 domains 583 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1646 Mibi-ChrMibi11 37272866 37277390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1646 26 675 B3 DNA Binding Superfamily AT4G23980 57.645 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi11g1646 AUX_IAA 6.2e-10 CL0072