Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1630 ATGAAATCGGGTTTTGCATTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATTCGTGCATTAGACAATTTTCCATATGGTTCTGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGTGAGCGTGGTCGTCATCGAGATGGGTCTAGAGCAAACCAGAGGCCCACAAAAACATTATTTGTGATTAACTTTGACCCACTTCGCACAAGAGTTCGTGATATAGAAAGACACTTTGAACCATATGGGAAAGTTCTTCATGTTCGGATCCGTCGGAATTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCCACTAAAGCTCTTGAGTGTACACACATGAGCAAGATATTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGCGACAAATATTATGACAGCCCCAGAAGAGGAGGGGGTTATGGAAGATCACCCAGTCCAGTTGCTCGTAGACGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGTACAATGGGCCGGCGTATGACAGACGAAGGAGTCCCGATTATGGTAGGCCCAGGAGTCCTGAATATGGTAGATATCGCAGCCGCTCACCAATCCGAAGGTCTAGGACTTGA 636 0.4686 MKSGFAFVYYEDERDAEDAIRALDNFPYGSDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPLRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDKYYDSPRRGGGYGRSPSPVARRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPEYGRYRSRSPIRRSRT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1630 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 29 IPR000504 GO:0003723
Mibi11g1630 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 123 IPR000504 GO:0003723
Mibi11g1630 211 Gene3D - 1 54 IPR012677 -
Mibi11g1630 211 SMART rrm1_1 60 126 IPR000504 GO:0003723
Mibi11g1630 211 MobiDBLite consensus disorder prediction 134 211 - -
Mibi11g1630 211 CDD RRM2_AtRSp31_like 60 129 - -
Mibi11g1630 211 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 74 - -
Mibi11g1630 211 SUPERFAMILY RNA-binding domain, RBD 3 132 IPR035979 GO:0003676
Mibi11g1630 211 Gene3D - 55 139 IPR012677 -
Mibi11g1630 211 MobiDBLite consensus disorder prediction 178 203 - -
Mibi11g1630 211 FunFam Serine/arginine-rich splicing factor RS31 51 141 - -
Mibi11g1630 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 42 IPR000504 GO:0003723
Mibi11g1630 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 130 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1630 Mibi-ChrMibi11 36998088 37000749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1630 4 208 Eukaryotic Initiation Factors Gene Family AT4G34110 26.407 3.20e-06 45.4