Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1627 ATGGTAGTAGATGTATTGTCTTCTGCTACTTCTGGTCCTACGTCAGAATTGATTTCTCAGCTTATAGATGCTATTTTTGAGCTGGTAAACTGTGCTAGTGATGTCCTTGTGAAGAAGGATAGCTTTAAGGAACTTGCAGCTTACTTGGAAAGAATCATACCCATCCTAAAAGAATTGAGGAATAAAAAGGTCAGTGATATTGAGACATTTAACCGAGCCATTGACATTTTGAATCGTGAAATTAGTGAGGCAAAGAAATTGATTCAAGAATGCAGCAAGAAGAACAAAGTCTATCTCTTATTGAACTGCAGGTCTATCACAAAGCGGTTAAAGAACAGTACGGGCGAGATCAGCCGTGCTCTTGCACTCATTCCTCTTGCTACCCAAGATCTTTCTTCTGGAATTATTGAAGAAATTGAAAATCTCTGTGACAATATGCAGAAAGCTGAGTTTAAGGCAGCCATAGCAGAAGAGCAGATTTTGGAGAAAATCGAGTCAGGGATACATGAAAAGAATGTTGACCGCTCTTATGCCAATAATTTGCTGGTTCTCATTGCACAAGCTGTTGGCATAACAAATGAGAAGTCAACAATGAAGAAAGAACTGGAAGAATTTAAGAGCGAAGTTGAAAATGCCCGTCTAAGGAAGGACCTGGCCGAAGCTATACAAATGGATCAGATGATCGCTCTGCTTGAAAGGGCTGATGCAGCCTCATCTCCAAGGGAAAGAGAATTGAAATACTTTGCTAAACGAAAATCTCTTGGAAGCCAGCCCTTAGACCCTCTTCAATCATTTTATTGCCCTATAAATCGAGATGTCATGGTGGACCCTGTTGAGACTTCTTCGGGGCAGACATTTGAGAGAACTGCCATAGAACAGTGGTTTGCAGCGGGAAATAAAATGTGTCCTCTGACAATGACTCCTTTAGATACATCAGTTTTGCGACCTAATAAAACCTTGAAACAATCAATAGAAGAATGGAAGGATCGAAATACTATGATTAGTATTGCTTCAATGAAAGAAAAAATCCCATCGGGAGAGGATGAAGAAGTACTGCGTTGTCTGGAAACTCTGAAGGGGTTGTGTGAAGAAAAAGATCAGCACAGAGAATGGATGGTAATGGAGAACTACATACCAGTTCTTATCCAGGTTCTTGGCTCCCGAAACCGTGATGTAAGGAATGAAGCTCTTGTCATCCTTTTCATGTTGGTTAAGGATAGTGATGATGCCAAGGAAAGACTTGCAAATGTTGATAATGCAATTGAATCGATTGTCCGTTCTCTTGGACGTCGTGTGACAGAAAGGAAATTGGCGGCAGCATTACTGTTGGAGTTATCCATGCATGATAGGTTACGAGAATACATTGGAAAGGTTCAAGGTTGCATACTACTATTAGTGACTATATCCAGTAGTGATGACAACCAAGCTGGCAAGGATGCTGCAGAACTTCTGGAGAATCTTTCATACTCTAATGAGAATGTTTTGCAGATGGCAAAGGCAAATTATTTCAAGCATCTTTTGCAGCTCCTTTCCTCAGGACCAGATGACGTAAAATTGCTTATGGCCACAACTCTAGCAGAAATGGAGTTAACTGACCACAATAAAGAGTCCTTATTTGCAGGCGGCGTTCTGGATCCTCTTCTTCACTTGGTATCGAATGGTGATCCTCATGTGAAAACCATGGCCATTAGAGCTCTTCGGAACCTATCCAGTTCAAAGAAAAATGGACTGGAAATGATTCGACAAGGAGCAGTGCGCCCATTATTTAACCTTATTTTCCAACGTAGCTTACCACCCTCAAGTTTGTGGGAACATGTGGCTGCCATAATCATGCAACTTGCTCAAGCAACGATTGTTCAAGATACCCAGATACCAATTTTATTATTTGAATCTGATGATGATGTTTTTAACCTCTTTGCCTTAATTAGATTCTCAGGGCCTGAGGTGAAGCGAAACATTATCCAGACCTTTTGTGCCTTGTGTCAATCCACATCATCTTCATACATCAAGACCAAGTTAATAGAGTGCTCTGCTGTTCAAGAACTGGTTCGGCTCTGTGAGAACGAAAACCTTTCTCTAAGAGCAAGTGCTGTAAAACTGTTGTCATGCTTGGTTGCTAGTTGCGATGAGGCAAGCATTCTGGAGAATGTAAACCAGAAGAGTTGTGAGAATTTAGTACGAATCCTTAGATCTTCTTTGGATGAAGAAGAACTTGCATCTGCTATGGGCATAATATGCCATCTGCCAGAAATTCCTCAGATCTCTCAATGGCTTCTAGATGATGGTGTGCTGCCCATCATTTATAAGTATATCCAAGAAGGGAAAGACAAAGATCTCCAAAAGAACAACTTAGTAGAGAATTCTGTGGGTGCCCTACATCGTTTCACAGTTCCGTCAAACTTGGATTGGCAAAGAAGTGCAGCAGAGTTTATAACTGTTTTAGTACAGTTGCTTGAATGTGGAACCACATTGGCAAAACAACGTTCAGCATTGTGTCTTAGTCAATTTTCAAAGAGTTCAGTTGGGCTGAGCAAGCCAGTTACCAAGCACAAAGGACTCTGGTGCTTCTCAGCTCCTGCAGGAATCAGCTGCTTGGTTCATGGAGGAATCTGTTCTGTCAAGTCATCATTTTGCCTTGTAGAGGCCGATGCGGTGGTCCCTCTGACAAGGACTCTCTGGGAATCCGATCCTGGAGCTTGTGAGGCTTCTTTGGATGCGCTCCTGACTTTGATTGAAGGTGAGAGACTGCAGAATGGTACTAAAGTGCTTGACTCAGCAAATGCCATACCAGCAATGATAAAATTTCTTAGTTCCTCATCCCCTGGATTGCAGGAAAAATCTCTTAATGCTCTGGAGAGGATTTTTAGGTTGATTGAGTACAAACAAAAGTATGGAGCCTCAGCTCAAATGCCCTTAGTTGACTTAACTCAGCGCGGTAATAGTAGCATGAGATCGATGGCCGCTAGAATATTGGCACATCTAAATGTGCTTCATGATCAGTCTTCTTATTTCTGA 3015 0.4166 MVVDVLSSATSGPTSELISQLIDAIFELVNCASDVLVKKDSFKELAAYLERIIPILKELRNKKVSDIETFNRAIDILNREISEAKKLIQECSKKNKVYLLLNCRSITKRLKNSTGEISRALALIPLATQDLSSGIIEEIENLCDNMQKAEFKAAIAEEQILEKIESGIHEKNVDRSYANNLLVLIAQAVGITNEKSTMKKELEEFKSEVENARLRKDLAEAIQMDQMIALLERADAASSPRERELKYFAKRKSLGSQPLDPLQSFYCPINRDVMVDPVETSSGQTFERTAIEQWFAAGNKMCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMISIASMKEKIPSGEDEEVLRCLETLKGLCEEKDQHREWMVMENYIPVLIQVLGSRNRDVRNEALVILFMLVKDSDDAKERLANVDNAIESIVRSLGRRVTERKLAAALLLELSMHDRLREYIGKVQGCILLLVTISSSDDNQAGKDAAELLENLSYSNENVLQMAKANYFKHLLQLLSSGPDDVKLLMATTLAEMELTDHNKESLFAGGVLDPLLHLVSNGDPHVKTMAIRALRNLSSSKKNGLEMIRQGAVRPLFNLIFQRSLPPSSLWEHVAAIIMQLAQATIVQDTQIPILLFESDDDVFNLFALIRFSGPEVKRNIIQTFCALCQSTSSSYIKTKLIECSAVQELVRLCENENLSLRASAVKLLSCLVASCDEASILENVNQKSCENLVRILRSSLDEEELASAMGIICHLPEIPQISQWLLDDGVLPIIYKYIQEGKDKDLQKNNLVENSVGALHRFTVPSNLDWQRSAAEFITVLVQLLECGTTLAKQRSALCLSQFSKSSVGLSKPVTKHKGLWCFSAPAGISCLVHGGICSVKSSFCLVEADAVVPLTRTLWESDPGACEASLDALLTLIEGERLQNGTKVLDSANAIPAMIKFLSSSSPGLQEKSLNALERIFRLIEYKQKYGASAQMPLVDLTQRGNSSMRSMAARILAHLNVLHDQSSYF 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1627 1004 Gene3D - 14 129 IPR036537 GO:0007166
Mibi11g1627 1004 Coils Coil 139 159 - -
Mibi11g1627 1004 SMART arm_5 365 405 IPR000225 GO:0005515
Mibi11g1627 1004 SMART arm_5 916 956 IPR000225 GO:0005515
Mibi11g1627 1004 SMART arm_5 531 571 IPR000225 GO:0005515
Mibi11g1627 1004 SMART arm_5 666 706 IPR000225 GO:0005515
Mibi11g1627 1004 SMART arm_5 490 530 IPR000225 GO:0005515
Mibi11g1627 1004 Gene3D - 862 1002 IPR011989 -
Mibi11g1627 1004 SUPERFAMILY ARM repeat 608 993 IPR016024 -
Mibi11g1627 1004 Gene3D - 334 432 IPR011989 -
Mibi11g1627 1004 CDD RING-Ubox_PUB 265 306 IPR045210 -
Mibi11g1627 1004 SUPERFAMILY ARM repeat 341 663 IPR016024 -
Mibi11g1627 1004 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 333 IPR013083 -
Mibi11g1627 1004 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Mibi11g1627 1004 Coils Coil 67 94 - -
Mibi11g1627 1004 Coils Coil 188 222 - -
Mibi11g1627 1004 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Mibi11g1627 1004 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Mibi11g1627 1004 SUPERFAMILY RING/U-box 252 332 - -
Mibi11g1627 1004 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Mibi11g1627 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1004 - -
Mibi11g1627 1004 Gene3D - 433 840 IPR011989 -
Mibi11g1627 1004 Pfam Armadillo/beta-catenin-like repeat 533 571 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1627 Mibi-ChrMibi11 36972893 36978979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1627 263 1004 U-box Gene Family AT1G76390 28.394 8.04e-58 212