Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1590 ATGCAGGAGAACATGAGCATCTCTGTGAATGGACAATCCCAGGTTCCTCCTGGTTTTCGTTTCCATCCAACAGAAGAGGAGCTTCTACAATACTACCTTAGGAAGAAGGTCTGTTACGAGAAGATCGACCTTGATGTTATTCGCGATGTCGATCTCAACAAGCTCGAGCCTTGGGATATACAAGAGAAGTGCAAAATAGGAACCACCCCACAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACTGGAACCCGTACGAACCGGGCCACGGCGGCCGGATTCTGGAAGGCGACGGGCCGAGACAAGGTTATATATGGAAACGGAAAAAGGATTGGAATGAGAAAGACCTTAGTTTTCTACAAAGGACGTGCCCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGGCTTGAAGATAACAATACCAGCACTGAAACAAGCATTGTGACAAATGTGATAGGAGATGGAGGACAGGAAGAAGGTTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACCATCTCAAAACCCTAGCAAGCCCCTTGGATTCCTCCATCACTGAGGAAACAATCATCAGAAATAACCACCACCACCACCACGAATCCATGTTCGACGTGGACGATGATGAGGGAGCTCTAGAGCAAATTCTTGAGCAAATGGGAAGAAGCTGTTGCAAAGAAGAAGAAGAAGAACAACAAAAGAACGACATCATCATCATGAACAAAAACAACGACGCCGCCAACAACAACAACAACAACAACCTTAACAACAATGGCTACTTCCACCATGATAGGTTCTTGAAGCTTCCTCGCTTAGAAAGCCCAAAATCTAATACCTACGGCTACCACCCTATTCTCGAAGGCGCATACTCCGGCTCCGGCACCGGTGACGCCAGCTTTGTTCATCATCAAACGGAATTGACGACTTCATCTGTTAATGGTGGCCTTGTCACTAGCTGGGCGGCGCTGGACAGGCTCGTGGCGTCGCAGCTTAACGGCTCCGGCACTGGGCAAACGGATACTTCGCGGGGCCCACCTTGCTTCAACGCCGGCGGCGAGGCATATGGGTTATTGAGTGAGCATGATCTGCAAAATCCAACCCTACGATCATCATCACTTTCATCAATAATATCATCATCTTCTTCTTCAGCTCATCACAATTACGATTATACCACCAGCGAGATTGACCTATGGAACTTTGCTAGATCAGCATCATCCTTAGTTTCATCAGGCTCCGAACCACTATGCCACGTGTCCAACACATCATCAGTGTAG 1290 0.4729 MQENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVCYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYGNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLEDNNTSTETSIVTNVIGDGGQEEGWVVCRIFKKKNHLKTLASPLDSSITEETIIRNNHHHHHESMFDVDDDEGALEQILEQMGRSCCKEEEEEQQKNDIIIMNKNNDAANNNNNNNLNNNGYFHHDRFLKLPRLESPKSNTYGYHPILEGAYSGSGTGDASFVHHQTELTTSSVNGGLVTSWAALDRLVASQLNGSGTGQTDTSRGPPCFNAGGEAYGLLSEHDLQNPTLRSSSLSSIISSSSSSAHHNYDYTTSEIDLWNFARSASSLVSSGSEPLCHVSNTSSV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1590 429 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Mibi11g1590 429 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 250 - -
Mibi11g1590 429 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Mibi11g1590 429 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Mibi11g1590 429 FunFam NAC domain-containing protein 24 180 - -
Mibi11g1590 429 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1590 Mibi-ChrMibi11 36192180 36193845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1590 1 427 NAC Transcription Factor Family AT2G46770 52.370 9.84e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mibi11g1590 NAM 7.4e-36 No_clan