Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1587 ATGTCTCATCCAAGGCAATTCCAGATGGTGGGTGGTGGTAATAACAATCCTGGTGGTGGGCATTACAACAATGACACAACTTTTACTAAAATCTTTGTTGGTGGATTGGCTTGGGAGACTCAAAGAGACACAATGAGGAGGTATTTTGAGCAGTTTGGTGAGATCCTTGAAGCTGTTGTTATCACAGACAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTTACATTTAAGGATCCAGAATCTGCCATGAGGGCATGCCAGAATCCATCTCCAGTTATTGATGGGAGAAGAGCAAATTGCAATCTTGCATCTCTTGGAGCAAACAAGAATCGCCCACCAACTCCTCAACACGGAGGAGGAAGGTTCAGACCTGGACCTGGACTTGTGGCTACTGCACCTGCATACCATGGCCCTTCTTCTTCTTCTACATTTTTCCATCAGCCATCTGGCCAATACACATTTCCATATTCAGCTTATGGGTATTCTGGATATTCACAAGACACCATGTATCCCATGAACTATTACAGTGTATACGGAGGAGGTCAACAATTTTCACCGTATTACCCTTCAAGTGGGGCATCTGGGCCACCACCAGGAGGACTGGTCCATAATATTTACCCTTTCTATGCTCAATATGCTCAGAGTACTAGCCAGCAAGCTCAAGGTTTTGGACTTCAATATCCTCATCATCAAATTCTACAGTTCCCATTTCTGCCTCACCAGCAACACTATGCCTCCTCCTCCTCCTCCTCCTCTGGGATCCTCTCTTTTCCTTCTTCGATGCCATTATTGTCAACTACTACTGCTGCTGCTGCTAAATTAACAGTTGCAACCACAGTGACGACAACATCAACAACAGAAGCAGCAATTACAACCGGGGCAGGTTCACAGTCTTCTTCTGGAACAGCTTCTGAGCAAAAATCTTCAACTTAG 936 0.4509 MSHPRQFQMVGGGNNNPGGGHYNNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQHGGGRFRPGPGLVATAPAYHGPSSSSTFFHQPSGQYTFPYSAYGYSGYSQDTMYPMNYYSVYGGGQQFSPYYPSSGASGPPPGGLVHNIYPFYAQYAQSTSQQAQGFGLQYPHHQILQFPFLPHQQHYASSSSSSSGILSFPSSMPLLSTTTAAAAKLTVATTVTTTSTTEAAITTGAGSQSSSGTASEQKSST 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1587 311 Gene3D - 5 123 IPR012677 -
Mibi11g1587 311 MobiDBLite consensus disorder prediction 286 311 - -
Mibi11g1587 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 88 IPR000504 GO:0003723
Mibi11g1587 311 SUPERFAMILY RNA-binding domain, RBD 25 128 IPR035979 GO:0003676
Mibi11g1587 311 MobiDBLite consensus disorder prediction 1 21 - -
Mibi11g1587 311 FunFam RNA-binding protein 24-B isoform X1 18 122 - -
Mibi11g1587 311 SMART rrm1_1 30 102 IPR000504 GO:0003723
Mibi11g1587 311 CDD RRM_RBM24_RBM38_like 29 104 - -
Mibi11g1587 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Mibi11g1587 311 PANTHER BOULE-RELATED 19 270 IPR037366 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1587 Mibi-ChrMibi11 36104144 36106001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1587 23 105 C2H2 Transcription Factor Family AT2G19380 43.373 3.39e-16 77.0