Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1579 ATGGAGAGGCTACTTCAAGGACCCATCAATTCCTGTTTCTTTGGTGAGCATTTGGGAGTGAACTGTTTCCAGCAAGTTCTGATTGAGAACCAAGAGGAAGAAGAAGAAGAAAAGAAAGAAGAGCTTTTGATTTCACTATCAAGTTTGGAAGATAAAATGCCATTTCTTGAGATGCTTCACAGTGTGGAATCTCAAACCCCACAATTTTTTCCCTTCAAAGATTCAAACTTTCAGTTTCAGACACTTGTAAACCACAAGAAACCACCATGCGAAGAAGAAGAAGAAGATACCCAAATCCACGCGCCGCCGGAGATAGATAGCTGCGTCACCCACGAGACGCCGGAGATTCCATCGCCGGCGAAATCTGGAAGCTGTAGGAGAAAGAGAAAGAGAATGAGAATGAGACCAATTAAAAGCAAAGAAGACGTTGAGAATCAACGTATGACCCACATTGCCGTTGAACGCAACCGCCGCCGCCAAATGAATGACCACCTTAGTGTCCTCAAGTCACTCATGCCTCCTTCATATATTCATAAGGGGGACCAAGCTTCCATTATTGGGGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGCTGCATCAATCTCTGGAGGCACAAAAAAGAATGAGAATGAATGATGAGGTTGGATTCAGCTATGGAACGATGTCGTCTTGCGGAGGAGAAGGAGGAACAAACTTTGGGGAAGAAGTGAAGGCAGAGAAGAGGTCAGAGGATGCAGAAATAGAAGTGACTGTGATTCAAAACCATGTGAACCTGAAAGTTCAGTGTAAGAGAAGAAGTGGGCAGTTGGTGAAGACCTTAATGGGTCTTGAGGATCTTAGGCTAACTATTCTACACCTAAACATAACATCTTCACTGGCCTCGGTTCTCTACTGTTTCAATCTCAAGATAGAAGAAGAGTGTAAAGTAGTGACGGCAAGTGAAATTGCAGGAGCAGTTCAAGAGATGTTGAGATTCATCAATGGAAGTTAG 993 0.4361 MERLLQGPINSCFFGEHLGVNCFQQVLIENQEEEEEEKKEELLISLSSLEDKMPFLEMLHSVESQTPQFFPFKDSNFQFQTLVNHKKPPCEEEEEDTQIHAPPEIDSCVTHETPEIPSPAKSGSCRRKRKRMRMRPIKSKEDVENQRMTHIAVERNRRRQMNDHLSVLKSLMPPSYIHKGDQASIIGGAIDFVKELEQLHQSLEAQKRMRMNDEVGFSYGTMSSCGGEGGTNFGEEVKAEKRSEDAEIEVTVIQNHVNLKVQCKRRSGQLVKTLMGLEDLRLTILHLNITSSLASVLYCFNLKIEEECKVVTASEIAGAVQEMLRFINGS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1579 330 Coils Coil 193 213 - -
Mibi11g1579 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 212 IPR036638 GO:0046983
Mibi11g1579 330 Gene3D - 137 212 IPR036638 GO:0046983
Mibi11g1579 330 Coils Coil 32 52 - -
Mibi11g1579 330 SMART finulus 151 202 IPR011598 GO:0046983
Mibi11g1579 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 196 IPR011598 GO:0046983
Mibi11g1579 330 PANTHER MAX DIMERIZATION, MAD 101 327 - -
Mibi11g1579 330 MobiDBLite consensus disorder prediction 108 134 - -
Mibi11g1579 330 CDD bHLH_AtFAMA_like 148 221 - -
Mibi11g1579 330 Pfam Helix-loop-helix DNA-binding domain 146 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1579 Mibi-ChrMibi11 35999399 36001556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1579 44 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.479 1.14e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi11g1579 HLH 4e-10 No_clan