Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1572 ATGGAGGGTGGGAGTGTTAGGGTTTCTGGGGCTGTAGAGGATGGTGACTCAGTAGTAGCTACTCGCTCCTCTCCCTCCTACTGGCTTGATGCTTGTGAGGATATTCCCTGTGATCTCATTCACTTTGATGATGGGTCTGTAGTCTCAGAACAGGCTGATAACAATTTGATACAGGATGGTATGGTTAATGATTTCTTTGGTGGCATTGATAGCATTCTTGATAGTATTAAGAATGGTAGTGGCCTCCCTGTGGCTACTGAGACTGGTAATGGAGACCAAGGCTTGTCTTTGGAACTGCAAGCTGACAATTCTGATCAGAAAGATAATATTTTGAAGAATGGGTTGGCTGGTGAAAAGCATGGCCGTTCTGTTGAAGTGTGTGGGCGTTTGGAAGCTGGAAGTAATGGGTGTGACATGTCTAATGGCAATGAGGAAGGGAGAACTTTGGGTGATTGTAAGGAGAATGGGGATGGTGATCTATCTATGGAGCATCATGTGGATGGTGAAGAAAGATTTGGCAAGAGGGCTCGTCTTGGGAGTTATAAGAATGAGAGGCTTTATCCCGGCAGAGGGAATTACCACACCAAGGAGAGGGAGAGGTGTTCTTATAGAAAAAGGTCACGGGAGTGGGATGAGGTTGATAGGAAGGAGAAAGATAGTGTGAGGAGAAGAGAAAGTTTTAATGGTTGTGGTAGGAGAGATGTGAGAGATAGGGATTGGAGGGATAGAGAAAGGGGTTACTGGGAGAGGGATAGGTCAGGTTCTAATGACATGGTCTTTCGCTTAGGCACTTGGGAAGCTGAACGATATCGAGAATTTAAGGTTGCTAATGACACTAAACAAGAATGCAATGTAAAGATTGAGACTAAAACTGAGGAGCCAAAGGAGAGAGTTCCTGAGGAAAAAGCTAGGAAGTACCAGATAGATGTTCTTGAGCAGGCAAAGCAGAGAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAGACACTTATCGCTGTTCTTCTCATGAAGAGTATTCATGAGAGTTTACAAAAGAAGAATAAAAAAATGCTTGCAGTATTTTTAGTTCCCAAAGTACCACTTGTTTATCAGCAAGCAGAAGTAATTCGAGAGCGAACTGGCTACCAAGTGGGTCACTACTGTGGAGAAATGGGACAGGACTTCTGGGATGCTCGAAGGTGGCAACGTGAATTCGAAACAAAACAGGTTTTAGTCATGACAGCTCAAATTCTTTTGAACATTCTGAGGCACAGCATAATAAAAATGGAAACAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAGAAACATCCATATTCACTGGTGATGTCTGAGTTTTATCATAGGACGCCCAAAGAGAAGAGACCATCTATATTTGGAATGACTGCATCTCCTGTTAACTTGAAAGGTGTCTCCAGTCAAGTGGATTGTGCAATTAAAATTCGGAATCTTGAAAGTAAGCTAGATTCTGTGGTTTGTACCATTAAAGATCGTAAGGAGCTGGAGAAGCATGTACCAATGCCTTCTGAAGTTGTGGTTGAGTATGACAAAGCAGCCAGTTTGTGTTATCTTCATGATCAGATAAAGCAGATGGAAGTTGAAGTTGAAGAAGCTGCAAAGTCAAGTTCAAGAAGGAGTAAATGGCAGTTCATGGGAGCTAGAGATGCAGGAGCCAAAGAAGAACTCCGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCCCTTGGTAAACTGGGTCAGTGGTGTGCTTATAAGGTGGCACATTCTTTTCTATCAGCTTTGCAAAATGATGAGAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATGCTATCTGAATAAAGTTGTGTCTCTTCTTCAATGTCAACTGTCAGAGGGTGCAGCATCTGACAAGAATGTTGGAGTCTCTGAACCAGAATGTGGTATGGCACAGGGTGGTTCGGAACCTGCTGATATTGAGGAAGGGGAGCTTCCAGACAGTCATGTTGTCTCTGGAGGGGAGCATGTGGATGTCATTATTGGAGCTGCTGTGGCAGATGGCAAGGTGACCCCTAAGGTTCAAGCTCTAATCAAAATACTTCTCAAGTATCAGAATACAGAAGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCTTTAGTTCTACCCAAGGTTTTTGCAGAGCTTCCATCTCTGAGTTTTGTTAAGTGTGCGAGCTTGATTGGCCACAACAATAGTCAGGAAATGAGGACCTCACAAATGCAGGATACAATTTCTAGGTTCCGTGATGGACGGGTTACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATACGGCAATGCAATGTTGTTATCCGCTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCTAGAGGTCGTGCAAGAAAGCCTGGGTCTGATTATATCTTGATGGTTGAGAGGGGGAACTTGTCGCATCAAGCATTTCTAAAGAATGCCAGGGATAGTGAAGAGACTTTGCGGAGAGAAGCAATTGAGAGAACAGACCTAAGTCATCTTAAAGACACTTCAAGGTTGATTTCTGTAGATGCAAGACCAGGAACTGTTTACCAGGTCGAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCAGTTGGTCTTGTCCACTTCTACTGCTCTCAGCTTCCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATAATGGAGAAGCATGAAAAATCAGGAGGTCCCACTGAATATTCTTGCAGGCTTCAATTGCCGTGTAATGCACCATTCGAAAATCTTGAGGGTCCCATATGCAGTTCAATGCGCCTTGCTCAACAGGCTGTTTGTCTAGCTGCTTGCAAGAAGCTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCAGACAAAGGAAGTGGAGAAGAAAGAGCAAAGGCTGAGCAAAATGATGAAGGAGATCCACTTCCAGGAACTGCTAGACATAGAGAGTTTTATCCTGAAGGTGTGGCGGATGTACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGTTTGCAGCAATTCCAAGGTGCTTCATCTTTATATGTACGCCGTTATGAGTGAAAACATAGGCCATTCAAAGGATCCATTCTTGACTCAAGTTTCAGAATTTGCGGTACTTTTTGGCAACGAGCTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTATCGCACGAACCATGACTACAAAGGCATCCCTTGTCTTTAGAGGGTCAATAGATATCACTGAGAGTCAGTTGGAATCCTTAAAAAGCTTTCATGTAAGATTAATGAGCATTGTCCTGGATGTGGATGTTGAACCTTCCACTACACCTTGGGATTCTGCAAAAGCATATTTATTTGTTCCAATGGTTAGCGATAAGTCTGTAGATCCTATGAACCAAATTGATTGGCATCTGGTTGAGACAGTAATTGAAACTGATGCATGGGAAAATCCACTTCAGAAGGCTCGACCAGATGTTTATCTTGGCACAAATGAGAGAACTTTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAGTTGCGTCATGGCATGGCTTTTGGGCAAAAACCACACCCAACTTATGGAGTCAGAGGAGCTGTTGCACAGTTTGATATAGTAAAAGCTTCAGGATTGGTTCCTAATAGACAAGTCATGCAAATGCAAAAGCATAGTAATAAAACTGCTCAAGGGAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAGGATAGTTACAGCTGCTCACTCAGGCAAGAGGTTTTATGTTGATTCAATACGCTATGATATGACTGCAGAGAACTCTTTTCCTAGAAAAGAAGGCTATCTTGGTCCCCTGGAGTACAGTTCATATGCTGACTACTACAAACAAAAGTATGGTGTGGATTTAATTTACAAGCATCAACCTCTTATAAGAGGACGGGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAACACATGAAGCCGAATCTGAAGAGGATCATGACAAAACGTATTATGTCTTTCTTCCTCCTGAGCTATGCCTTGTACACCCCCTGCCTGGATCACTCATTCGTGGGGCCCAGAGGCTGCCTTCAATAATGAGGAGAGTTGAAAGTATGCTTCTGGCAATTCAACTTAAGAATATGATAAATTATCCAGTCCAGTCTTCCAAGATATTAGAGGCCTTGACTGCTGCTTCCTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTAGGAGATGCATATCTCAAATGGGTTGTTAGTAGATTTCTTTTCCTAAAATATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTGAGTAAAGGACTTCAATCATATATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCAGGGGTGCTGCCTGTATTTGATGAGGATACTAGGGATGGAGAGTCATCTTTATTTGAGCAGGAGAGATTGGTTCCAAAGATGGAGAAGATGGATCACCTTTCTGATGGATTTGAGGATGATGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTATAGAGTCCTGTCCAGCAAGACACTTGCAGATGTTGTAGAAGCTCTGATTGGGGTGTATTATGTTGAAGGTGGGAAGAATGCTGCGAATCATCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGATAAGGTGGAGTGTACAAGGAAGCCAAACACTGTTCCTGATAGCATACTTAGAAGTGTTGACTTCGATGCTTTGGAAGGTGCTTTGAATATCAAGTTTAGAGACAAGGGGCTGCTTATAGAAGCAATAACTCATGCATCAAGACCATCCTCTGGAGTATCCTGTTATCAGCGGTTAGAGTTTGTTGGTGATGCGGTCTTGGATCATCTTATTACTAGGCACTTGTTTTTCACTTACACAGATTTGCCACCGGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAACAATGAAAACTTTGCACGTGTTGCTGTTAAACACAGTCTTCATGTCCATCTTCGACATGGGTCCAGTGCCCTAGAAAAACAGATTACTGAATTTGTGAAGGAAGTTCAAGAGGAATTGTTAAAGCCAGGGTTTAACTCCTTTGGCTTGGGAGACTGCAAAGCACCCAAAGTCCTTGGTGACATTGTTGAATCTATTGCCGGCGCCATTTTTCTTGACAGTGGACGGGATACTTCCGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTGACCCCTGAGACTTTGCCTATGCATCCTGTGCGGGAGCTACAAGAGCGATGCCAGCAGCAGGCTGAAGGCTTAGAGTACAGAGCCTGTCGAATTGGAAATTTGGCTACTGTTGAAGTATTCATCGATGGTGTGCAAGTCGGGGTGGCTCAAAATCCTCAGAAGAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAAGAGGTAGCCAAAACTAAGGAGAAGGATGATGAAAATGGTAAAAAGAAGGGTGGAAACCAGACATTCACCAGACAAACATTAAACGATATCTGTTTGCGGAGAAATTGGCCTATGCCATTCTATCGGTGTGTGAATGAGGGTGGTCCAGCTCATGCAAAGAGGTTTACATTTGCAGTTCGGGTCAATACCACTGATAGAGGATGGACGGATGAATGTATAGGAGAGCCAATGCCAAGTGTGAAAAAGGCCAAGGATTCTGCTGCTGTTCTTCTTTTAGAACTGCTAAATAAATTATACTCCTAA 5895 0.4305 MEGGSVRVSGAVEDGDSVVATRSSPSYWLDACEDIPCDLIHFDDGSVVSEQADNNLIQDGMVNDFFGGIDSILDSIKNGSGLPVATETGNGDQGLSLELQADNSDQKDNILKNGLAGEKHGRSVEVCGRLEAGSNGCDMSNGNEEGRTLGDCKENGDGDLSMEHHVDGEERFGKRARLGSYKNERLYPGRGNYHTKERERCSYRKRSREWDEVDRKEKDSVRRRESFNGCGRRDVRDRDWRDRERGYWERDRSGSNDMVFRLGTWEAERYREFKVANDTKQECNVKIETKTEEPKERVPEEKARKYQIDVLEQAKQRNTIAFLETGAGKTLIAVLLMKSIHESLQKKNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMETINLLILDECHHAVKKHPYSLVMSEFYHRTPKEKRPSIFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHDQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGKLGQWCAYKVAHSFLSALQNDERANYQLDVKFQECYLNKVVSLLQCQLSEGAASDKNVGVSEPECGMAQGGSEPADIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTSQMQDTISRFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHQAFLKNARDSEETLRREAIERTDLSHLKDTSRLISVDARPGTVYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHEKSGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEERAKAEQNDEGDPLPGTARHREFYPEGVADVLKGEWILSGKDVCSNSKVLHLYMYAVMSENIGHSKDPFLTQVSEFAVLFGNELDAEVLSMSMDLFIARTMTTKASLVFRGSIDITESQLESLKSFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPMVSDKSVDPMNQIDWHLVETVIETDAWENPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKPHPTYGVRGAVAQFDIVKASGLVPNRQVMQMQKHSNKTAQGKLMMADTCTNAEDLVGRIVTAAHSGKRFYVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKHQPLIRGRGVSYCKNLLSPRFEHSETHEAESEEDHDKTYYVFLPPELCLVHPLPGSLIRGAQRLPSIMRRVESMLLAIQLKNMINYPVQSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTRDGESSLFEQERLVPKMEKMDHLSDGFEDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDKVECTRKPNTVPDSILRSVDFDALEGALNIKFRDKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHSLHVHLRHGSSALEKQITEFVKEVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRACRIGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEVAKTKEKDDENGKKKGGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKLYS 1964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1572 1964 MobiDBLite consensus disorder prediction 1864 1884 - -
Mibi11g1572 1964 FunFam Endoribonuclease dicer-like protein 298 538 - -
Mibi11g1572 1964 FunFam Endoribonuclease dicer-like protein 1403 1597 - -
Mibi11g1572 1964 Gene3D Ribonuclease III domain 1403 1599 IPR036389 GO:0004525|GO:0006396
Mibi11g1572 1964 Gene3D Ribonuclease III domain 1621 1795 IPR036389 GO:0004525|GO:0006396
Mibi11g1572 1964 Pfam Helicase conserved C-terminal domain 706 823 IPR001650 -
Mibi11g1572 1964 Pfam Ribonuclease III domain 1438 1585 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 Pfam Ribonuclease III domain 1661 1774 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 FunFam Endoribonuclease dicer-like 1 893 994 - -
Mibi11g1572 1964 Gene3D - 1798 1877 - -
Mibi11g1572 1964 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 310 487 IPR014001 -
Mibi11g1572 1964 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1886 1959 - -
Mibi11g1572 1964 Gene3D paz domain 1258 1379 - -
Mibi11g1572 1964 MobiDBLite consensus disorder prediction 987 1009 - -
Mibi11g1572 1964 SMART ultradead3 299 502 IPR014001 -
Mibi11g1572 1964 CDD RIBOc 1642 1797 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 CDD SF2_C_dicer 703 833 - -
Mibi11g1572 1964 FunFam Endoribonuclease dicer-like 1 1621 1795 - -
Mibi11g1572 1964 PANTHER DICER-RELATED 1249 1865 - -
Mibi11g1572 1964 SMART helicmild6 739 825 IPR001650 -
Mibi11g1572 1964 CDD DSRM_DCL_plant 1892 1953 - -
Mibi11g1572 1964 Gene3D Dicer dimerisation domain 893 994 IPR038248 -
Mibi11g1572 1964 SUPERFAMILY PAZ domain 1256 1381 IPR036085 GO:0005515
Mibi11g1572 1964 ProSitePatterns Ribonuclease III family signature. 1661 1669 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 898 993 IPR005034 GO:0016891
Mibi11g1572 1964 Pfam Type III restriction enzyme, res subunit 306 469 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mibi11g1572 1964 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1886 1961 IPR014720 -
Mibi11g1572 1964 Gene3D - 1892 1962 - -
Mibi11g1572 1964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 840 IPR027417 -
Mibi11g1572 1964 ProSiteProfiles Ribonuclease III family domain profile. 1424 1585 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 CDD RIBOc 1420 1603 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 SUPERFAMILY RNase III domain-like 1397 1603 IPR036389 GO:0004525|GO:0006396
Mibi11g1572 1964 SMART DRBM_3 1887 1960 IPR014720 -
Mibi11g1572 1964 SMART DRBM_3 1801 1862 IPR014720 -
Mibi11g1572 1964 CDD PAZ_CAF_like 1234 1383 - -
Mibi11g1572 1964 ProSiteProfiles Ribonuclease III family domain profile. 1626 1774 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 SUPERFAMILY RNase III domain-like 1625 1796 IPR036389 GO:0004525|GO:0006396
Mibi11g1572 1964 FunFam endoribonuclease Dicer homolog 1 1892 1961 - -
Mibi11g1572 1964 Pfam Dicer dimerisation domain 898 986 - -
Mibi11g1572 1964 ProSiteProfiles PAZ domain profile. 1241 1381 IPR003100 GO:0005515
Mibi11g1572 1964 SMART PAZ_2_a_3 1241 1405 IPR003100 GO:0005515
Mibi11g1572 1964 CDD DEXHc_dicer 302 501 - -
Mibi11g1572 1964 SMART riboneu5 1641 1797 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 SMART riboneu5 1420 1605 IPR000999 GO:0004525|GO:0006396
Mibi11g1572 1964 Gene3D - 696 861 IPR027417 -
Mibi11g1572 1964 Pfam PAZ domain 1249 1401 IPR003100 GO:0005515
Mibi11g1572 1964 SUPERFAMILY dsRNA-binding domain-like 1756 1868 - -
Mibi11g1572 1964 MobiDBLite consensus disorder prediction 1864 1881 - -
Mibi11g1572 1964 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1800 1863 IPR014720 -
Mibi11g1572 1964 FunFam Endoribonuclease Dicer 1 1261 1379 - -
Mibi11g1572 1964 Gene3D - 297 541 IPR027417 -
Mibi11g1572 1964 FunFam Endoribonuclease dicer-like 1 697 859 - -
Mibi11g1572 1964 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 709 870 IPR001650 -
Mibi11g1572 1964 SUPERFAMILY dsRNA-binding domain-like 1890 1960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1572 Mibi-ChrMibi11 35934354 35944904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1572 722 865 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 1.05e-06 51.6