Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1564 ATGTCTGCTTTCTCTCCTCCATCTTCTTCTTCATTTTACATGAAGAAGGATCCCAAAGGTGACGCCTTTACCATCTGGGTATCTGTTCTGATGACCCTTGAAGCTTCCAAGCATAGACAAAGACCAAACCCATCAACATCAGCTTCTGCAGCGACACCCTCTTCCAATATTCTTAAGGATACTACGGGGTTCATGGCCTTTCTCATGGTACCATTAGTTCTGTCTTGCCTTGTTCTCACTGTCTCTTCTTCTTGTACCCAATTGGATAAGGAGTCTCTCTTGGACTTCTACAATAATCTATCCATACAGCCTCGTCCTCCTCTTAATTGGTCTTCTTCTTTTGATTGCTGCTCTTGGGAAGGCATTCAATGTGATGAGAGGAATTTGGGTGATGAGGATCAGCGAGTTATTGGATTATTGCTTCCATCCAGAGGTCTTGCTGGTTCTATATCCCCTGCTCTCATGAACCTCACTGGTCTTTCTCAGCTCAATCTCTCACATAATCGACTTTCTGGTAATCTCCCAAACCAATTCTTCTCACTACTTAGTCACCTGCGGATTCTTGATTTGAGCTACAATCGTCTCTCTGATGAATTGCCAGCATCTGTTGTTGATAATAATGAAACCAGTAGTAGTAGTATTATCCAGGAGGTTGATTTGTCTAGCAATCTGTTTCAAGGGACACTTCCTTCTTCTTTCCTTCAGTACCTTGGAGCTGCTGCAGCAGCAGGGACTTTGACATCTTTTAATGTTAGTAACAATAGCTTCATAGGTCCAATTCCCACTTCTCAACTTTGCACTAATCACAGTCTCAGATTCTTGGATCTTTCCTACAATAAATTCAATGGTTCTATTCAGTTTGGATGGGGGAAATGTTCCCAGCTTGAGATCTTCCGAGCAGGTTTCAATTTACTCACTGGGCCTCTTCCTGTTGATCTTTTTGATGCCCTTTCCCTCAGAGAGATCTCCTTCCCCCTCAATCAGCTCTCTGGAAATATTGATGATGGCATTATTAGCCTCACCAACCTCACAGTCCTGGAGCTATACTCCAATAGTTTTTGGGGACCTATACCACGAGATATTGGTAAGCTATCCAAGCTGGAAATGCTACTTCTTCATATAAACAATTTGACGGGTACTTTACCTCCATCTCTGGTGAACTGTGTCAATCTTGTTGAGCTAAATTTAAGGGCCAACTTCTTGAAGGGGAATCTTGCAGACTTTAATTTCTCTGGATTCCAGCGGCTTACTAGTCTTGATCTTGGCAACAATAATTTTACTGGCAATTTGCCAACCACCCTTTATGCATGCAAATCACTTTCTGCACTAAGGCTGGCATCTAATCAGCTTGAGGGACAGATCACATCAGATATACTTGGACTTGAGTCTCTGTCTTTCCTATCAATATCTACCAACTACCTAAGAAATTTCACTGGAGCTATGAAGATACTTGCAGGACTCAAGAACCTTAGTACCCTTGTCCTCTCAAAGAATTTTTACAATGAAACCATCCCGAATGATGAGAACTTGGTAGGCCCAGATGGATTTCAGGAACTTCAAGTTCTAGCCTTAGGTGGTTGTAATTTCACAGGTCAAGTACCAGGCTGGCTTGCAAGTTTTAGGACGCTCGAGGTCATTGATCTGTCCTTTAATATCATCACTGGTTCAATTCCTCCTTGGTTGGGTAAACTTCCACAACTATTCTACATTGACTTGTCTCATAACCAACTTACAGGAGTATTTCCCACAGAACTCGCAGGAATTCCAGCATTAACATCACAACAGGCAAATGATAGAATAGTAAACCTGGAGTTACCTGTCTTCATAAATGATAGAATTGTGCCAAACAATGCTTCTCAGCTGCAGTATAATCAGCTTTCCAACCTACCACCAGCCATATATCTGAGAGACAATAGTCTCAGTGGCGATATTCCTAAGGAGGTTGGCCTTATGAAAGCCCTACATCAGCTGGATCTGGGTAATAACAACTTCTCTGGCAGTATTCCAGTTCAAATTTCTAACTTGACTAACTTAGAGAAGTTAGACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGCTTCACTCAAAAACCTGCACTTCTTGTCATTTTTTACTGTGGCAAACAATGATCTTCAAGGAGTGATACCAACAGGTGGACAATTTGATACTTTCCCTCCTTCCAGCTTTGCTGGAAACCCACGATTGTGTGGTTCATCCATACAACGTTCTTGCCCTAGTCCACAAGTTAACGATGCAGCTCATCGCACTTCAAACAAAAAAATCTTGATTGGACTTGTTATCGCAGTCTGTTTGGGCACTGTTGCTATCATGATTGTATTGGTAATCTGGATACTTTCCAAGAGGAGGATCAATCCAGGGGGGGATCCAGACAAGATTGAACTGGAATCAGTTTCTGCACACTCCAATAGTGGTGTTCATCCTGAAGTTGATAAGGAGGCTAGCCTAGTGGTAATGTTCCCCAATAAGAAAAATGAAATCAAAGATCTCAACATATTTGAGATCTTAAAAGCCACTGAAAATTTCAGTCAAGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACTTTACCTGATGGAACTAAGCTAGCTATCAAGAAACTTTCAGGAGATATGGGGCTTATGGAAAGGGAATTCAAAGCAGAGGTAGAGGCTTTGTCAACCGCCCAACACGACAATTTGGTTGCTTTGCAAGGTTACTGTGTTCATAATGGCTTTCGGCTTCTTATATATTCTTTCATGGAAAATGGAAGTCTGGATTATTGGTTGCATGAGAAGCCTGATGGTGCAACTCAACTTGATTGGCCAACTCGACTGAAGATAGCACGGGGCGCGAGTTATGGGTTGGCTTACATGCATCAGATATGCGAACCACACATTGTCCACCGCGATATAAAGTCAAGCAACATTCTCCTTAATGAGAAGTTTGAGGCACATGTTGCTGATTTTGGGCTGTCTCGGTTGATTCTTCCTTATCACACTCATGTCACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCTGAGTATGGACAGGCATGGGTTGCCACTCTCAGGGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGACCTGTTGACATATGCAAGCCAAAAATGTCAAGAGAATTGGTTGGCTGGGTGCAACAAATGAGAAGTGAAGGAAAACAAGATGAAGTTTTTGACCCTCTTTTGAGAGGAAAAGGCTTTGAAGAGGAGATGCTGCAGGTACTTGATGTGGCCTGCATGTGTGTCAACTTGAATCCTTTCAAGAGACCTAGCATCAGAGAAGTTGTTGATTGGTTGAAGAATGTAGGATCAGCCAAACAACAACAGATTAAATAG 3399 0.4234 MSAFSPPSSSSFYMKKDPKGDAFTIWVSVLMTLEASKHRQRPNPSTSASAATPSSNILKDTTGFMAFLMVPLVLSCLVLTVSSSCTQLDKESLLDFYNNLSIQPRPPLNWSSSFDCCSWEGIQCDERNLGDEDQRVIGLLLPSRGLAGSISPALMNLTGLSQLNLSHNRLSGNLPNQFFSLLSHLRILDLSYNRLSDELPASVVDNNETSSSSIIQEVDLSSNLFQGTLPSSFLQYLGAAAAAGTLTSFNVSNNSFIGPIPTSQLCTNHSLRFLDLSYNKFNGSIQFGWGKCSQLEIFRAGFNLLTGPLPVDLFDALSLREISFPLNQLSGNIDDGIISLTNLTVLELYSNSFWGPIPRDIGKLSKLEMLLLHINNLTGTLPPSLVNCVNLVELNLRANFLKGNLADFNFSGFQRLTSLDLGNNNFTGNLPTTLYACKSLSALRLASNQLEGQITSDILGLESLSFLSISTNYLRNFTGAMKILAGLKNLSTLVLSKNFYNETIPNDENLVGPDGFQELQVLALGGCNFTGQVPGWLASFRTLEVIDLSFNIITGSIPPWLGKLPQLFYIDLSHNQLTGVFPTELAGIPALTSQQANDRIVNLELPVFINDRIVPNNASQLQYNQLSNLPPAIYLRDNSLSGDIPKEVGLMKALHQLDLGNNNFSGSIPVQISNLTNLEKLDLSGNQLSGEIPASLKNLHFLSFFTVANNDLQGVIPTGGQFDTFPPSSFAGNPRLCGSSIQRSCPSPQVNDAAHRTSNKKILIGLVIAVCLGTVAIMIVLVIWILSKRRINPGGDPDKIELESVSAHSNSGVHPEVDKEASLVVMFPNKKNEIKDLNIFEILKATENFSQANIIGCGGFGLVYKATLPDGTKLAIKKLSGDMGLMEREFKAEVEALSTAQHDNLVALQGYCVHNGFRLLIYSFMENGSLDYWLHEKPDGATQLDWPTRLKIARGASYGLAYMHQICEPHIVHRDIKSSNILLNEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDICKPKMSRELVGWVQQMRSEGKQDEVFDPLLRGKGFEEEMLQVLDVACMCVNLNPFKRPSIREVVDWLKNVGSAKQQQIK 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1564 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 971 983 IPR008271 GO:0004672|GO:0006468
Mibi11g1564 1132 PRINTS Leucine-rich repeat signature 567 580 - -
Mibi11g1564 1132 PRINTS Leucine-rich repeat signature 675 688 - -
Mibi11g1564 1132 ProSiteProfiles Leucine-rich repeat profile. 677 700 IPR001611 GO:0005515
Mibi11g1564 1132 SMART serkin_6 849 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g1564 1132 SUPERFAMILY Protein kinase-like (PK-like) 836 1120 IPR011009 -
Mibi11g1564 1132 Pfam Leucine Rich Repeat 677 699 IPR001611 GO:0005515
Mibi11g1564 1132 Pfam Leucine rich repeat N-terminal domain 89 125 IPR013210 -
Mibi11g1564 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 303 404 - -
Mibi11g1564 1132 SMART LRR_sd22_2 340 366 - -
Mibi11g1564 1132 SMART LRR_sd22_2 182 209 - -
Mibi11g1564 1132 SMART LRR_sd22_2 675 701 - -
Mibi11g1564 1132 SMART LRR_sd22_2 157 176 - -
Mibi11g1564 1132 Gene3D Transferase(Phosphotransferase) domain 1 925 1132 - -
Mibi11g1564 1132 Gene3D Ribonuclease Inhibitor 240 313 IPR032675 -
Mibi11g1564 1132 SUPERFAMILY RNI-like 163 587 - -
Mibi11g1564 1132 Pfam Leucine Rich repeat 183 198 IPR001611 GO:0005515
Mibi11g1564 1132 Pfam Leucine Rich repeat 267 283 IPR001611 GO:0005515
Mibi11g1564 1132 Gene3D Ribonuclease Inhibitor 411 753 IPR032675 -
Mibi11g1564 1132 FunFam Leucine-rich repeat receptor protein kinase MSP1 810 924 - -
Mibi11g1564 1132 Pfam Leucine rich repeat 390 450 IPR001611 GO:0005515
Mibi11g1564 1132 Pfam Leucine rich repeat 518 577 IPR001611 GO:0005515
Mibi11g1564 1132 FunFam Tyrosine-sulfated glycopeptide receptor 1 410 750 - -
Mibi11g1564 1132 Gene3D Ribonuclease Inhibitor 88 239 IPR032675 -
Mibi11g1564 1132 ProSitePatterns Protein kinases ATP-binding region signature. 855 878 IPR017441 GO:0005524
Mibi11g1564 1132 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 310 405 - -
Mibi11g1564 1132 Pfam Protein kinase domain 850 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g1564 1132 SUPERFAMILY L domain-like 484 740 - -
Mibi11g1564 1132 Gene3D Phosphorylase Kinase; domain 1 810 924 - -
Mibi11g1564 1132 FunFam Leucine-rich repeat receptor-like kinase 89 214 - -
Mibi11g1564 1132 ProSiteProfiles Protein kinase domain profile. 849 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g1564 1132 FunFam Leucine-rich repeat receptor-like protein kinase 925 1131 - -
Mibi11g1564 1132 Gene3D Ribonuclease Inhibitor 314 410 IPR032675 -
Mibi11g1564 1132 SMART LRR_typ_2 675 698 IPR003591 -
Mibi11g1564 1132 SMART LRR_typ_2 651 674 IPR003591 -
Mibi11g1564 1132 SMART LRR_typ_2 413 437 IPR003591 -
Mibi11g1564 1132 SMART LRR_typ_2 157 181 IPR003591 -
Mibi11g1564 1132 SMART LRR_typ_2 182 206 IPR003591 -
Mibi11g1564 1132 SMART LRR_typ_2 564 587 IPR003591 -
Mibi11g1564 1132 SMART LRR_typ_2 364 388 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1564 Mibi-ChrMibi11 35824546 35827944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1564 67 780 Miscellaneous Gene Families AT1G17240 50.139 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Mibi11g1564 Pkinase 3.7e-38 CL0016