Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1557 ATGAAAGATGGTGCTGTCATGGATTTTAGGAGCAATCCCAGCTCGTTTTCCTTCTTAGCCTCATTTTCTCAGATTCGTATACTAATAACTACCCTTGTTGCACAAAAAGCCCAGCTGAACCCAAATAGATTCACAAGTTTCAGTCTTTCGACTTCCCTTCAAGTAAAGTTTACATCTTTGTCTCTGGGGAAATCGAAACTCGGAAGAATCACATCAATGGCTCCCGATCACGATGACGACTTCAAGGACGAGAAGAACCCACCTCCCCTCGACGAGGATGACATTGCCCTTCTCAAAACCTATGGTCTGGGACCTTATTCTACAAGTATAAAAAAGGTGGAGAAGGAGATTAAAGAGATGGCAAAGAAAGTCAATGATTTATGTGGTATTAAGGAATCTGATACTGGTTTAGCTGCACCAAGTCAGTGGGATCTTGTGTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTGGCCAGATGCACAAAGATAATAAATCCAAATTCTGAAGATGCCAAATATGTTATCAATGTTAAGCAGATTGCAAAGTTTGTTGTTGGGTTGGGTGACAAAGTCTCCCCCACTGATATAGAGGAAGGAATGCGTGTTGGGGTTGATAGGAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTTACCATGATGACAGTGGAAGAGAAGCCAGATGTGACGTATAATGATGTTGGTGGCTGTAAGGAGCAGATTGAAAAGATGAGAGAAGTGGTTGAACTTCCTATGCTTCATCCAGAGAAATTTGTCAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTCTGCTATGGCCCACCAGGAACTGGCAAAACGCTTTTGGCCAGGGCTGTCGCTAATAGAACTGATGCCTGTTTCATTAGGGTCATTGGGAGTGAGCTAGTTCAAAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGATGGCCCGATCAAAGAAGGCATGTATTGTGTTTTTTGATGAAGTCGATGCGATTGGAGGTGCCCGTTTTGATGATGGTGTTGGTGGGGACAATGAGGTTCAGCGCACAATGCTTGAAATTGTGAATCAGCTCGATGGGTTTGATGCTCGTGGAAACATCAAAGTTTTGATGGCAACAAACAGGCCCGACACGCTTGATCCTGCCCTACTTCGACCTGGGCGTTTGGATCGTAAGGTTGAGTTTGGTCTCCCTGATTTAGAGAGCAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAGAGGGATATTCGATTTGAACTTCTTGCTCGGCTTTGCCCCAATTCCACTGGAGCTGATATAAGGAGTGTATGCACTGAAGCCGGCATGTATGCTATCCGCGCCCGAAGGAAGACTGTAACAGAGAAGGACTTCCTTGATGCGGTGAATAAAGTCATTAAAGGGTACCAAAAGTTCAGTGCAACTCCCAAGTACATGGTTTACAACTGA 1497 0.4415 MKDGAVMDFRSNPSSFSFLASFSQIRILITTLVAQKAQLNPNRFTSFSLSTSLQVKFTSLSLGKSKLGRITSMAPDHDDDFKDEKNPPPLDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1557 498 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 81 484 - -
Mibi11g1557 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 488 IPR027417 -
Mibi11g1557 498 FunFam 26S protease regulatory subunit 7 411 482 - -
Mibi11g1557 498 Gene3D - 230 409 IPR027417 -
Mibi11g1557 498 SMART AAA_5 273 412 IPR003593 -
Mibi11g1557 498 FunFam 26S protease regulatory subunit 7 230 409 - -
Mibi11g1557 498 Gene3D - 104 229 IPR012340 -
Mibi11g1557 498 CDD AAA 243 410 - -
Mibi11g1557 498 Gene3D - 411 492 - -
Mibi11g1557 498 Pfam ATPase family associated with various cellular activities (AAA) 277 409 IPR003959 GO:0005524|GO:0016887
Mibi11g1557 498 ProSitePatterns AAA-protein family signature. 380 398 IPR003960 GO:0005524|GO:0016887
Mibi11g1557 498 FunFam 26S protease regulatory subunit 7 105 229 - -
Mibi11g1557 498 Pfam AAA+ lid domain 432 475 IPR041569 -
Mibi11g1557 498 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 170 481 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1557 Mibi-ChrMibi11 35706146 35711912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1557 242 463 Calmodulin-binding Proteins AT3G56690 37.220 3.60e-41 156