Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1550 ATGACCATCAACAACAACAACAAGCTCTTCTTCTGCTTCTCTTTTTTCATTTCTCTCCATCTATTCTCCATTAATGTCGTCCAAGCTAGCTCTCACAAAAACTCCGACACCGACACCGTCAAACTCACCTGTAGTTCCACAACTTACCCGGAACTTTGCTTCTCTTCCATCGCCGCCGCCGCCACCGAGAAAGTGTCGACAAAAAAAGACATCATAGAAGTGTCGCTTAACATTACAATCAAAGCCGTACAGAATAACTCTGTCATCATCAACAATATCCAAAGAACCACAACAAACCTCACAAAGAGAGCCCAAACAGCTCTCCAAGATTGCCTTGAAATCATTGACCACACTCTCTCCGCCCTCCGCCGCACCGTCAATTACCTCAACGACACATCGCGCCGCTCCGACGACCTCAAGACTCTTATCAGCGCAGCCATAACCGACCAAGAGACTTGCATGGATGGTTTCTCACATGATATCAGGGATAGGAACGTGAGGGACCATGGAGGAATCATGGACGGACACATGAACGTCGAAAGGATGTCCAGCAACACCCTCGCCATGATCATGAATATGACCAGTGGCACCCGTGGCTCAGTCAAGACAAAGTCGAAGGAGACTGGTGGACACATGATGATTGTTACCAGAGAATCGCTAAGTACAAAGTCGAAGGAGACTGGGATGATTGTTACTAGAGAGTCGCGAAGTACAAAGTCGAAGGAGACTGATGGACATAAGATAATTGGAACTGGAGGGTCAGTCAGTACAAATTCGAAGGAGACTGATGGGTACGGGATTGGTACCGGAGGGTCGCTTAATACAAAGTCAAAGGAGACTGGTATACACGGGATTAAAACTGGAGGTCCGGAAAGTACAAAGTTGAAGGAAACTGGTGGACATGAGATAAGGTGGCCGGAGTGGATGTCTGCTGGGGACAGGAGGCTCCTGCAGGCGTCGACGGTGGAGGCGGATGTGGTGGTGGCGGCGGACGGGAGCGGGGACTACACTACGGTGTCGGAGGCCGTGGCGGGGGCACCGGAGGAGAGTAGTACGAGGTACACTTCCACCACTATCATCACTGGGAGTCTAAATGTTGCTGATGGAAGCACCACCTATAGGTCTGCCACAGTCGTAGGGGATGGATTCTTGGCAAGAGGCATAACATTTCAGAACACAGCGGGTCCAACAAAGAACCAAGCAGTGGCAATGAGGGTGGAAGGAGATCTGTCTGCATTCTATCTCTGCAACTTTCTTGGCTATCAAGACACACTCTACGTTCGTATTAATAGGCAGCCATGGAAGGAGTATTCGAGGACGGTGATAATGGAGAGTTATATAAGTGATATAATAAACCCAGCTGGTTGGTTAGCTTGGAGTGGAACATTTGCATTGGACACTTTGTTCTATGGGGAGTATGATAACTATGGGCCTGGGGCTGATACTTCTCAAAGAGTTCATTGGGAAGGCTTTGAGGTTATTACTAATGCTTCTGAAGCTCTTAGTTTCACCCCTGGAAGCTTCATTTCTGGCTCCTCCTGGTTGCCCTCTACTGGCTTCCCATATGATCTTGGTCTTTAA 1581 0.4864 MTINNNNKLFFCFSFFISLHLFSINVVQASSHKNSDTDTVKLTCSSTTYPELCFSSIAAAATEKVSTKKDIIEVSLNITIKAVQNNSVIINNIQRTTTNLTKRAQTALQDCLEIIDHTLSALRRTVNYLNDTSRRSDDLKTLISAAITDQETCMDGFSHDIRDRNVRDHGGIMDGHMNVERMSSNTLAMIMNMTSGTRGSVKTKSKETGGHMMIVTRESLSTKSKETGMIVTRESRSTKSKETDGHKIIGTGGSVSTNSKETDGYGIGTGGSLNTKSKETGIHGIKTGGPESTKLKETGGHEIRWPEWMSAGDRRLLQASTVEADVVVAADGSGDYTTVSEAVAGAPEESSTRYTSTTIITGSLNVADGSTTYRSATVVGDGFLARGITFQNTAGPTKNQAVAMRVEGDLSAFYLCNFLGYQDTLYVRINRQPWKEYSRTVIMESYISDIINPAGWLAWSGTFALDTLFYGEYDNYGPGADTSQRVHWEGFEVITNASEALSFTPGSFISGSSWLPSTGFPYDLGL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1550 526 MobiDBLite consensus disorder prediction 220 297 - -
Mibi11g1550 526 CDD PMEI-like_3 44 195 - -
Mibi11g1550 526 Gene3D - 357 430 IPR012334 -
Mibi11g1550 526 Gene3D - 322 356 IPR012334 -
Mibi11g1550 526 Gene3D - 431 526 IPR012334 -
Mibi11g1550 526 SUPERFAMILY Pectin lyase-like 320 525 IPR011050 -
Mibi11g1550 526 FunFam Pectinesterase 36 194 - -
Mibi11g1550 526 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 193 IPR006501 GO:0004857
Mibi11g1550 526 SMART PMEI_2 35 189 IPR006501 GO:0004857
Mibi11g1550 526 Pfam Plant invertase/pectin methylesterase inhibitor 39 189 IPR006501 GO:0004857
Mibi11g1550 526 MobiDBLite consensus disorder prediction 229 246 - -
Mibi11g1550 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 194 IPR035513 -
Mibi11g1550 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 193 IPR035513 -
Mibi11g1550 526 Pfam Pectinesterase 433 511 IPR000070 GO:0030599|GO:0042545
Mibi11g1550 526 Pfam Pectinesterase 356 432 IPR000070 GO:0030599|GO:0042545
Mibi11g1550 526 PANTHER PECTINESTERASE 24 432 - -
Mibi11g1550 526 MobiDBLite consensus disorder prediction 250 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1550 Mibi-ChrMibi11 35648147 35652211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1550 57 526 Carbohydrate Esterase AT4G02320 29.020 8.95e-45 163