Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1546 ATGGATTCTGTGAACCACTCATTCTTCAAGAGTTATGCTAAGGAAGATGAACTAGAGAACCAAGCCTATCAAAAAAAGACACGTAAACGCATGATCATCTTAATCATCTCCTCCATCGTTCTCACCATCGTCGTCGTCGCCGGCATCGTCGGAACCCTACTTCACACGCGTAACACATCCTCCGGCGACTCAGTCTCTTCCTCCCCCGCCGAGTTAACCCCGGCGGCGTCACTAAAAGCCGTCTGCGACGTAACTCGTTACCCTAACACATGCATCTCCAGCATCTCCTCTCTCCCTAGCTACTCCAACACCACTGATCCCGAAATCCTCTTCAAGTTCTCCCTCCAAGTCGCCATCAACGACCTCTCGAAGCTCGCCGCCTACACGGCGGAGCTCAGGGGAGGCGACGTCGCCGGTGACGGAGGAGGTGTCCGAGCCGCCCTCGACGTCTGCATGGACGTGCTGGAGGACGCGGCGGGCCGGCTCGACGACTCGGCCTCGTCGCTTGATGTCGGAGGGGACGAGGCCATCCTGACGCCGGGGAAGATCGACGACGTCAGGACATGGCTGAGTGCAGCCATCACAGACCAGGAGACATGCCTGGACGTGATAAAGGAATTGGGGTGCGCCTCTGCTACCAGCAGCAGCAAAGAGAAGGTCTTCGTTGGAATGAGGACCCTAATGGGGAACTCAACGGAGTCCACTAGCAATAGCTTGGCTATTGTCACGAAGATCCTTAGGGTCCTTGCTAGGGTTAACATGCCGCTCCATCGTCGTCGGAGGCTTCTCGGGTCGGGTTTTCCGGCGTGGGTCGGCCCGACGGAGCGGAGGCTGTTGCTGCGGGAGGGGGAGGCGGACGTGGTGGTGGCGAAGGACGGGACCGGGCGGTACCGGACGGTGAGTGAGGCGGTGGCGACGGTGGGGAGGAAGAGTGAGAGGAGGTTTGTGATTTATGTGAAGGAAGGTGTTTATGTGGAAAATGTGGTGTTGAAGAAGGATATGTGGAATGTGATGATTATTGGAGATGGGAAAAATAAAACTATTATCTCCGGCAGCAGGAATAGGATCGATGGTACACTCACTTTTGACACTGCCACTTTTGCCGTAAGTGGGAAGGGATTCATGGCAAGAGACATTGGATTTGTCAACAATGCCGGCCCAGAGAAACACCAAGCAGTGGCGGTGCGATCAGGTTCCGACCAATCGGTGTTCTACCGGTGCTCGTTCGACGGCTACCAAGACACACTCTATGCACATTCTAACCGTCAATTCTACCGTGAATGTGACATCACCGGCACCGTCGACTTCATCTTCGGCAACGCAGCTTCGATTTTCCAGAATTGCACTATCAGGCCCATAGAGCCTCTCTCAGGCCAGTTCAATACCATCACAGCCCAGGGCAAAACTGATCCAAATCAGAACACTGGCATTGTGATCCACAATTCTAATATTTCTGCTCTTGATAATCTTGCTGCTTCCACCTATCTTGGCAGGCCTTGGAAAAATTACTCTACTACTGTTATAATGAAGTCTGAGATTGGGCCTTTCTTGGACCCATTGGGCTGGGCTGAATGGACCACTGATGAGGAGCCTCCTAGTACTATATTTTATGCTGAGTATCAGAATACTGGGCCGGGCTCAAATGTTAGCGAGAGGGTTCAATGGGCCGGTTATAGGCCCAATATATCTGAAAATGAGGCAAGGAAGTTTACTGTGGAGTCATTTATACAGGCTAATCAGTGGCTACCTGATACACACGTGGAATTTCAGTCCTCTTTATAA 1782 0.5275 MDSVNHSFFKSYAKEDELENQAYQKKTRKRMIILIISSIVLTIVVVAGIVGTLLHTRNTSSGDSVSSSPAELTPAASLKAVCDVTRYPNTCISSISSLPSYSNTTDPEILFKFSLQVAINDLSKLAAYTAELRGGDVAGDGGGVRAALDVCMDVLEDAAGRLDDSASSLDVGGDEAILTPGKIDDVRTWLSAAITDQETCLDVIKELGCASATSSSKEKVFVGMRTLMGNSTESTSNSLAIVTKILRVLARVNMPLHRRRRLLGSGFPAWVGPTERRLLLREGEADVVVAKDGTGRYRTVSEAVATVGRKSERRFVIYVKEGVYVENVVLKKDMWNVMIIGDGKNKTIISGSRNRIDGTLTFDTATFAVSGKGFMARDIGFVNNAGPEKHQAVAVRSGSDQSVFYRCSFDGYQDTLYAHSNRQFYRECDITGTVDFIFGNAASIFQNCTIRPIEPLSGQFNTITAQGKTDPNQNTGIVIHNSNISALDNLAASTYLGRPWKNYSTTVIMKSEIGPFLDPLGWAEWTTDEEPPSTIFYAEYQNTGPGSNVSERVQWAGYRPNISENEARKFTVESFIQANQWLPDTHVEFQSSL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1546 593 ProSitePatterns Pectinesterase signature 2. 430 439 IPR033131 -
Mibi11g1546 593 ProSitePatterns Pectinesterase signature 1. 311 330 IPR018040 -
Mibi11g1546 593 PANTHER PECTINESTERASE 37 585 - -
Mibi11g1546 593 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 209 IPR006501 GO:0004857
Mibi11g1546 593 Gene3D - 281 593 IPR012334 -
Mibi11g1546 593 Pfam Pectinesterase 286 579 IPR000070 GO:0030599|GO:0042545
Mibi11g1546 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 246 IPR035513 -
Mibi11g1546 593 FunFam Pectinesterase 281 593 - -
Mibi11g1546 593 CDD PMEI-like_3 80 247 - -
Mibi11g1546 593 FunFam Pectinesterase 74 246 - -
Mibi11g1546 593 SUPERFAMILY Pectin lyase-like 285 589 IPR011050 -
Mibi11g1546 593 SMART PMEI_2 73 241 IPR006501 GO:0004857
Mibi11g1546 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 246 IPR035513 -
Mibi11g1546 593 Pfam Plant invertase/pectin methylesterase inhibitor 78 241 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1546 Mibi-ChrMibi11 35594865 35597606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1546 1 587 Carbohydrate Esterase AT1G53840 54.040 0.0 618