Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi11g1539 | ATGCAAGGAGTTGGACCTTCAGGTTCTTTTGCAGGTAATGTGTTCGTTGATGAATTCTACTTCTCCGCTCTGTTTGATGAAGACGAAATATTTCCAATCTCCGATGAGAAATATGCAGAACAGATACAATTGCAAGAGGCCCTCATGTCCTCTGTTATGAACATGTCCACTACAACATGCACACACAACAACGATGATGATGATCATCAGATGATTGATAATGTCGAAGATTCTTCAGGAAAAGGGAAAGCCAAATTAGACACAGGGGAATCTTCTAGAAACTCCAGCAACATCATCATGAGCTTCTGTAACATTTGCATGGAAGACAAACCAATAGAAAAAATGTTCACTGACAACAAAAGTTGCAATCATGTTTTCTGTTCAAACTGTATGGAATCCTATGTGTCATCGAAGCTTCAAGAGAACATATCAATGGTGAAATGCCCTGACCCAAAATGTAGGGGAATCATAAAGCCTATGTTTTGTAGATCCATAATCCCAAATGAGTTATTTGAGAGGTGGGAAAATGCATTGTGTGAGAATTTGATTCTTGGCTCTCAGAAATTTTACTGTCCTTTTAAGGATTGTTCGGCGATGTTGGTGGACGATGGCGATGAGGTAGTGACTTCGTCGGAGTGTCCGAATTGCCGGAGGTTGTTCTGTGCTCAGTGCAAGGTTACGTGGCACGCTGGCATGGATTGTTCTGAGTTTCAGAGACAGAAAGATGATGATAGGACACATAATGATGACTTGTTGATGAAGGAACTTGCTAAGAATAAGAAATGGAGAAGATGCCCTCGTTGTAGATTCTTTGTGGAGAAGATTGATGGTTGCTCTCATATTTCCTGCAGGTGCGGTAATCATTTTTGTTATGGTTGCGGATCTGATTGGAACAAGCATCATGGGTGTCCTCTTTAG | 918 | 0.4107 | MQGVGPSGSFAGNVFVDEFYFSALFDEDEIFPISDEKYAEQIQLQEALMSSVMNMSTTTCTHNNDDDDHQMIDNVEDSSGKGKAKLDTGESSRNSSNIIMSFCNICMEDKPIEKMFTDNKSCNHVFCSNCMESYVSSKLQENISMVKCPDPKCRGIIKPMFCRSIIPNELFERWENALCENLILGSQKFYCPFKDCSAMLVDDGDEVVTSSECPNCRRLFCAQCKVTWHAGMDCSEFQRQKDDDRTHNDDLLMKELAKNKKWRRCPRCRFFVEKIDGCSHISCRCGNHFCYGCGSDWNKHHGCPL | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi11g1539 | 305 | SUPERFAMILY | RING/U-box | 102 | 181 | - | - | |
| Mibi11g1539 | 305 | Pfam | IBR domain, a half RING-finger domain | 252 | 303 | IPR002867 | - | |
| Mibi11g1539 | 305 | Pfam | IBR domain, a half RING-finger domain | 173 | 234 | IPR002867 | - | |
| Mibi11g1539 | 305 | ProSiteProfiles | TRIAD supradomain profile. | 99 | 305 | IPR044066 | - | |
| Mibi11g1539 | 305 | SUPERFAMILY | RING/U-box | 249 | 303 | - | - | |
| Mibi11g1539 | 305 | SMART | ibrneu5 | 172 | 234 | IPR002867 | - | |
| Mibi11g1539 | 305 | SMART | ibrneu5 | 245 | 303 | IPR002867 | - | |
| Mibi11g1539 | 305 | MobiDBLite | consensus disorder prediction | 59 | 93 | - | - | |
| Mibi11g1539 | 305 | MobiDBLite | consensus disorder prediction | 62 | 88 | - | - | |
| Mibi11g1539 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 183 | IPR013083 | - | |
| Mibi11g1539 | 305 | Gene3D | - | 232 | 304 | - | - | |
| Mibi11g1539 | 305 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 63 | 297 | IPR031127 | GO:0004842|GO:0016567 | |
| Mibi11g1539 | 305 | ProSitePatterns | Zinc finger RING-type signature. | 122 | 131 | IPR017907 | - | |
| Mibi11g1539 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 152 | IPR001841 | - | |
| Mibi11g1539 | 305 | SUPERFAMILY | RING/U-box | 180 | 239 | - | - | |
| Mibi11g1539 | 305 | FunFam | RBR-type E3 ubiquitin transferase | 99 | 185 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi11g1539 | Mibi-ChrMibi11 | 35525146 | 35527058 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi11g1539 | 103 | 302 | C3H Transcription Factor Family | AT2G31770 | 26.570 | 2.33e-18 | 83.6 |