Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1508 ATGCAGAATCACAGGTTGAAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAACAACAATCTCTTTACCATCCTGGCCTTTTAGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTTGGGAATATACATACACAGGTAACCGAACCACTTCTGCAAGAAGTTTTTGCAAGTACTGGCCTAGTTGAAGGTTGTAAACTTATCCGTAAGGAGAAGTCATCCTATGGATTCGTTCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTTCAACATATTTGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGCTCCGATGCAAGGGTAATGTGGGATCAGAAGACTGGACGTTCTAGAGGGTTTGGTTTTGTGTCATTTCGTAATCAACAGGATGCTCAAAGTGCAATAAATGATTTGACTGGAAAGTGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTTCTAATGAAGACAAGCAAAGCTCTGACTCTAAAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACAGCTAACAGCGATGCTCCAGAGAACAATCCTCAATATACTACTGTCTATGTGGGCAATCTTGCTCCAGAGGTTACTCAGCTCGAGCTTCATCGCCACTTCCATGCTCTTGGGGCTGGATTGATAGAAGAGGTTCGTGTCCAGCGGGATAAAGGGTTTGGTTTTGTGAGGTATAGTACTCATGCTGAAGCAGCTTTGGCTATTCAGATGGGAAATGCCCAGTCTATTCTCTGTGGAAAACCAATTAAGTGCTCTTGGGGTAGCAAGCCCACTCCTCCGGGAACTGCTTCGAATCCTTTACCCCCACCGGCAGCTGCGCCTCTTCCGGGCCTATCAGCAACTGATCTTCTCGCATATGAGAGACAGTTAGCAATGAGCAAGATGGGTGGCGTACATGCCCTTATGCATCCCCAAGGACAGCACCCTCTTAAACAGGCTGCAATTGGAGGAAGCCAGGCAATATATGATGGTGGGTTTCAGAATGTTGCTGCCGCCCAACAGATGATGTATTACCATTAA 1251 0.4588 MQNHRLKQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGLVEGCKLIRKEKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQSSDSKSVVELTNGSSEDGKETANSDAPENNPQYTTVYVGNLAPEVTQLELHRHFHALGAGLIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1508 416 Gene3D - 133 230 IPR012677 -
Mibi11g1508 416 Gene3D - 1 132 IPR012677 -
Mibi11g1508 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 333 IPR000504 GO:0003723
Mibi11g1508 416 MobiDBLite consensus disorder prediction 215 257 - -
Mibi11g1508 416 CDD RRM3_TIA1_like 258 333 - -
Mibi11g1508 416 FunFam oligouridylate-binding protein 1-like isoform X2 135 230 - -
Mibi11g1508 416 SUPERFAMILY RNA-binding domain, RBD 36 130 IPR035979 GO:0003676
Mibi11g1508 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 50 336 - -
Mibi11g1508 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Mibi11g1508 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 126 IPR000504 GO:0003723
Mibi11g1508 416 CDD RRM2_PUB1 138 212 - -
Mibi11g1508 416 SUPERFAMILY RNA-binding domain, RBD 131 222 IPR035979 GO:0003676
Mibi11g1508 416 SMART rrm1_1 259 329 IPR000504 GO:0003723
Mibi11g1508 416 SMART rrm1_1 53 122 IPR000504 GO:0003723
Mibi11g1508 416 SMART rrm1_1 138 211 IPR000504 GO:0003723
Mibi11g1508 416 Gene3D - 235 337 IPR012677 -
Mibi11g1508 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 323 IPR000504 GO:0003723
Mibi11g1508 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Mibi11g1508 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Mibi11g1508 416 SUPERFAMILY RNA-binding domain, RBD 249 340 IPR035979 GO:0003676
Mibi11g1508 416 CDD RRM1_TIA1_like 54 124 - -
Mibi11g1508 416 FunFam oligouridylate-binding protein 1B-like isoform X2 1 134 - -
Mibi11g1508 416 FunFam Oligouridylate-binding protein 1C 235 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1508 Mibi-ChrMibi11 34883314 34887904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1508 47 333 Eukaryotic Initiation Factors Gene Family AT1G49760 29.373 1.58e-25 107