Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi11g1457 | ATGGGATTGCCTGATTATGTTTCAATCCTTATTGTAGCAGCACTAATAGCTGCACTTTTATTCTGCAGCCTCACCATGCTTGGTTGGTGTACCTACAGAAGTATTGATGTGATACAATCCATTCCATCCACAAGAACAAACTTAACTCTTGATGATAAGCTCCATTCCTTCACCACAAGCCTAGAATCTCACTCCAAGACATTTCAGTTCAGAGCTGCAGAAGCTGTACAAGGCACTGATCAGACTGAATGCATCATCTGTTTGGCACTCTTTGAAGAAGAAGACAGTGTGAGGCAGCTTCATAGCTGCAAACACATCTTCCATACGATTTGCATCGACACTTGGCTTGCCTCTCATTCTGGCTGCCCTTTATGCAGAACCCAAATAGACCATATGCTACTTTCTCCAAATACCACTGAGGAAGTGTCCTTTCCAAGAAGGTCTGTGACTTCAGAGGAAAATAACCACAATCAGATGGTCTTGTTCCTCTGA | 492 | 0.4309 | MGLPDYVSILIVAALIAALLFCSLTMLGWCTYRSIDVIQSIPSTRTNLTLDDKLHSFTTSLESHSKTFQFRAAEAVQGTDQTECIICLALFEEEDSVRQLHSCKHIFHTICIDTWLASHSGCPLCRTQIDHMLLSPNTTEEVSFPRRSVTSEENNHNQMVLFL | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi11g1457 | 163 | ProSiteProfiles | Zinc finger RING-type profile. | 84 | 126 | IPR001841 | - | |
| Mibi11g1457 | 163 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 133 | IPR013083 | - | |
| Mibi11g1457 | 163 | SMART | FANCL_C_2 | 80 | 134 | - | - | |
| Mibi11g1457 | 163 | SMART | ring_2 | 84 | 125 | IPR001841 | - | |
| Mibi11g1457 | 163 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 8 | 136 | - | - | |
| Mibi11g1457 | 163 | SUPERFAMILY | RING/U-box | 72 | 132 | - | - | |
| Mibi11g1457 | 163 | Pfam | Ring finger domain | 83 | 126 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi11g1457 | Mibi-ChrMibi11 | 34185436 | 34185927 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi11g1457 | 82 | 140 | C3H Transcription Factor Family | AT2G42350 | 50.820 | 6.78e-18 | 75.5 |