Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1450 ATGGATGGTGGTGCACAATACAATCCTCGTACGGTCGAAGAGGTTTTTAGGGATTTCAAGGGAAGAAGAGCCGGACTCATAAAAGCCCTTACCACCGATGTTGAGGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAGTGGGAAGTGAATTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCAGAACCTGTGCTGGGAATAAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTAGCTGTCCACAGTGACGCATGGTTACTTGCTATTGGTTTCTACTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAAAGACTTTTCAACATGATTAATGAACTACCAACGGTATTTGAAGTTGTTACGGGTACTGCAAAGAAACAAATTAAGGAGAAGTCTTCAGGTTCAAATCATAGTGGCAGTAAACCAAAGTCCAACGCTAAAGCGCGAGGTTCAGAATCTGTGGGAAAGCATTCAAAGGCTATGCAATCAAGAGATGAGGAAGAAGGACCGGAAGAAGTAGATGAAGATGAACATGGAGAGACTTTGTGCGGGGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGTTGTGACATCTGTGAAAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCATCTTGCAGTAACAAGAGGGCTCGTCCCTGA 762 0.4344 MDGGAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIGFYFGARFGFDRADRKRLFNMINELPTVFEVVTGTAKKQIKEKSSGSNHSGSKPKSNAKARGSESVGKHSKAMQSRDEEEGPEEVDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1450 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Mibi11g1450 253 CDD PHD_AL_plant 199 249 IPR044104 -
Mibi11g1450 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Mibi11g1450 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Mibi11g1450 253 MobiDBLite consensus disorder prediction 167 183 - -
Mibi11g1450 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Mibi11g1450 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Mibi11g1450 253 MobiDBLite consensus disorder prediction 144 193 - -
Mibi11g1450 253 SMART PHD_3 199 247 IPR001965 -
Mibi11g1450 253 Pfam PHD-finger 200 249 IPR019787 -
Mibi11g1450 253 SUPERFAMILY FYVE/PHD zinc finger 190 250 IPR011011 -
Mibi11g1450 253 MobiDBLite consensus disorder prediction 144 164 - -
Mibi11g1450 253 FunFam PHD finger alfin-like protein 192 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1450 Mibi-ChrMibi11 34099780 34104327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1450 1 252 Alfin-like Transcription Factor Family AT3G42790 75.099 6.84e-128 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mibi11g1450 Alfin 1.2e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1450 11 34099780 34104327 Mibi04g0421 04 7352131 7354571 CCT
Mibi04g0421 04 7352131 7354571 Mibi11g1450 11 34099780 34104327 ECH
Mibi11g1450 11 34099780 34104327 Mibi11g1450 11 34099780 34104327 ECH