Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1443 ATGGGAAACCAGAAGCAAAAATGGACGGCGGAGGAAGAAGAAGCTTTACTCGCCGGAATAGCCAAACATGGTCCCGGAAAGTGGAAGAACATTCTTAAGGATCCCGAGTTTGCGCCTTTTCTCACTCATCGTTCCAACATTGACCTTAAGGATAAATGGAGGAACTTAAGTGTTAACACCGCTGCTCAAGGTTCTAAAGATAAAGCAAGAAATCCAAAGGTTAAAGCTATTATGCCTGCTCCTGTTGCCAGCATTCAAAATGCTACTTCTGCTGCTCCAGTTCGTCAAAGTGCAGCATCTGATGCTGCCAATGATGAGGCTGCTCAAAAAGCACAGGATGTGAAGAATGCTCCACGGTATAATGGAATGGTTTTTGAAGCCTTGTCAACAATAAAAGATGCCAATGGTTCTGACATAAACACCATTGTTAGTTTCATTGAGAAAAGGCATGAGGTGCCTCAGAATTTCAGAAGGGCACTAAGTACGAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAAGATACAAAATTGTTACAAGATAAAGAAGGATACACCTTCTGGGGCAAAACCTCTCCCAGTGAAACAAAAGGACATCTGGCAACATCAACCACCAGCGTCTAATGTAGTGTCTTCCTATGACACTGCTAAGGATGCTGCTGATACTGCAGCTTACAGGCTTGCAGAAGCTGAGAACAAATCATTTCTGGCTGCTGAAGCAGTCAAGGAGGCAGAAAGACTCGCAAAATATGCCGAAGAAGCTGAAGCAGTATTACAGCTAGCCAAAGAGATATATGAACAATGTACTAATAAGCAGTTCTATCTACATGCTCGCGTGGTGAAGCTATTGTCTTGGCTTGAAGTCGGTGAAATGCAAGGTCGATCATAG 891 0.4377 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVNTAAQGSKDKARNPKVKAIMPAPVASIQNATSAAPVRQSAASDAANDEAAQKAQDVKNAPRYNGMVFEALSTIKDANGSDINTIVSFIEKRHEVPQNFRRALSTRLRRLVAQGKLEKIQNCYKIKKDTPSGAKPLPVKQKDIWQHQPPASNVVSSYDTAKDAADTAAYRLAEAENKSFLAAEAVKEAERLAKYAEEAEAVLQLAKEIYEQCTNKQFYLHARVVKLLSWLEVGEMQGRS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1443 296 Coils Coil 238 272 - -
Mibi11g1443 296 Gene3D - 2 58 - -
Mibi11g1443 296 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mibi11g1443 296 SMART sant 4 59 IPR001005 -
Mibi11g1443 296 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi11g1443 296 PANTHER SINGLE MYB HISTONE 4 1 274 IPR044597 GO:0003691
Mibi11g1443 296 Pfam linker histone H1 and H5 family 118 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi11g1443 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mibi11g1443 296 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mibi11g1443 296 Coils Coil 214 234 - -
Mibi11g1443 296 Gene3D - 112 200 IPR036388 -
Mibi11g1443 296 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi11g1443 296 FunFam Telomere repeat-binding factor 1 2 58 - -
Mibi11g1443 296 SUPERFAMILY "Winged helix" DNA-binding domain 116 192 IPR036390 -
Mibi11g1443 296 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Mibi11g1443 296 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1443 Mibi-ChrMibi11 34015187 34019932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1443 1 278 Single Myb Histone (SMH) Gene Family AT1G72740 51.943 1.37e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mibi11g1443 Linker_histone 7.3e-10 CL0123