Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1397 ATGAAGAGTTTGATGTTTCAACAGCAACAAGTAGTAGTGGAAGAAAACATGTCCAATTTGACTTCTGCATCTGGTGAGGCAAGTGTTTCCTCAGGAAATAGAAACGAAATTGCTACCAATTATCCTCCACAACAACAATACTTTGCTTCACCATCATCAACATCTCAAACAACTCAGCCCCTGAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCAGATGCTGAAGTGATAGCCTTGTCTCCCAAGAGTCTTCTGGCAACAAACAGGTTCATCTGTGAGATCTGCAACAAAGGGTTTCAGAGAGACCAGAATCTTCAGCTTCATAGGAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACAAACAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCCACATGTGTGCACCATGACCCAGCAAGAGCACTTGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAAAAATATGCAGTTCAATCGGATTGGAAAGCTCACTCCAAAACCTGTGGAACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAAAGTGCAAGATCATCAAATCCACCATCACTTCTTCATAACAATTCTCGTCCACCACCCATTATAACTTCTTCATCACCAGCATCTCATCACATTCTGAATCTCCAAGCCCAGTTCAACAACAACAACAACCACCATCAAAACCTCCATTCTTCTTTACAACTGAAGAAAGAACAAAGCTTCAATCTCCTTCCTCCTTGGCTAGCAGCTGGCCCATCATCATCCACCATTCATAACAATGACCTATCTTCTTCTTCCTCCCCATCATCAAGATTACTATTATTGGATCAGGACTTTTCACAAACACCTCATGGGCATCATCATCTTCATCATCACCATGAAAACCCTAACCCTATTGGTGGGCCCACCCTCCCCCCTGCATACCAACCAGCGCCTTCCCCGCACATGTCAGCAACAGCCTTGTTGCAGAAAGCAGCACAAATGGGTGCCTCTGCTTCTTCCAATACACCACCACAACATCAACAACAACAACAACCCATGATTAGGACCCACCATCTCACTCACGTGATGCCTCCTCTTCCTCCTCCTCCTCCTCATTCTGACTCTCCCTCTGATCCTTACACTAATGGTAATTTTTGTTTGAACTTGTCATCATCACGTGACTCTGCAGTACTCTCTTCTACTTCATCTGTTCTTCATGATGTTATGAGCTCTTTCTCTGCTGCTGCTGCTACTACTATTTCTCCTTCTGGGTTTGAAGGAACGTCTTTTGAGGATGCTTTTGGTGGGATTTTGGGCTCAAAGAGTTGTAAAGATGGGAACTTTCTTGATACCTTTTCAAAGATGACAAACCCCACCGGAGATGAGGGTGGCGGCGGAGGGAAGAATAGTGAAGGGTTGACGAGAGATTTCTTGGGTCTTGCACCACTCTCTCATAGTGACATTCTCAGCTTTGCTGGAATTGGTAATTGCATCAACAACCCCACTACTTCCCATGATCAACACAAACAATCCCAAAAACCTTGGCAAGGTTAG 1656 0.4487 MKSLMFQQQQVVVEENMSNLTSASGEASVSSGNRNEIATNYPPQQQYFASPSSTSQTTQPLKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSSNPPSLLHNNSRPPPIITSSSPASHHILNLQAQFNNNNNHHQNLHSSLQLKKEQSFNLLPPWLAAGPSSSTIHNNDLSSSSSPSSRLLLLDQDFSQTPHGHHHLHHHHENPNPIGGPTLPPAYQPAPSPHMSATALLQKAAQMGASASSNTPPQHQQQQQPMIRTHHLTHVMPPLPPPPPHSDSPSDPYTNGNFCLNLSSSRDSAVLSSTSSVLHDVMSSFSAAAATTISPSGFEGTSFEDAFGGILGSKSCKDGNFLDTFSKMTNPTGDEGGGGGKNSEGLTRDFLGLAPLSHSDILSFAGIGNCINNPTTSHDQHKQSQKPWQG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1397 551 MobiDBLite consensus disorder prediction 224 247 - -
Mibi11g1397 551 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Mibi11g1397 551 Gene3D Classic Zinc Finger 146 225 - -
Mibi11g1397 551 SMART c2h2final6 167 187 IPR013087 -
Mibi11g1397 551 SMART c2h2final6 91 113 IPR013087 -
Mibi11g1397 551 SMART c2h2final6 132 162 IPR013087 -
Mibi11g1397 551 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Mibi11g1397 551 MobiDBLite consensus disorder prediction 364 390 - -
Mibi11g1397 551 MobiDBLite consensus disorder prediction 18 76 - -
Mibi11g1397 551 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Mibi11g1397 551 MobiDBLite consensus disorder prediction 321 419 - -
Mibi11g1397 551 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 45 535 IPR031140 -
Mibi11g1397 551 MobiDBLite consensus disorder prediction 18 64 - -
Mibi11g1397 551 MobiDBLite consensus disorder prediction 396 410 - -
Mibi11g1397 551 Gene3D Classic Zinc Finger 72 138 - -
Mibi11g1397 551 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Mibi11g1397 551 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Mibi11g1397 551 FunFam protein indeterminate-domain 12-like 70 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1397 Mibi-ChrMibi11 33160546 33162982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1397 13 405 IDZ Gene Family AT1G55110 54.591 1.40e-124 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi11g1397 zf-C2H2_jaz 8.2e-05 CL0361