Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1362 ATGAGTCGCTACGACAGTCGCTCTGGGGACCCCACTTCTTACCGTGACCGCAGAACTGATTCGGGGCTGGGTGCTCCCACAGGTTACTCTTCCTCAAGCAGGAAGGATCATGATGATGGTGGATCCCCAAAGAAATTGAATTTGGATGGCCTGCCTCATTTTGAGAAGAATTTCTATGTTGAATCACCTGAGGTGAGGGCTATGACTGATGATGAGGTTAATGAGTATCGCCGGAAGAGGGATATAACTGTTGAAGGCCGAGATGTCCCAAAACCAGTCAAAAGCTTTCACCTTGCTGGTTTCCCAGAGTATGTTTTGCAAGAAATTACAAAAGCTGGATTTGTTGAACCCACACCTATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGTCGTGATCTCATAGGAATAGCAGAAACCGGATCAGGGAAGACGCTTTCTTATTTGTTGCCTGCAATCGTACATATTAATGCCCAGCCTATTCTTGAACCTGGAGATGGACCTATTGTGCTAGTTTTGGCTCCAACTCGTGAGCTTGCTGTCCAAATACAACAAGAGGCTACTAAGTTTGGTGCATCATCTAGGATTAAGAGTACATGCATTTATGGTGGGGTACCTAAGGGACCTCAGGTGCGGGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCGGGAAGGTTGATTGACATGATTGAGTCAAATCATACTAACTTACGAAGAGTTACATACCTTGTATTGGATGAGGCTGATAGAATGTTGGACATGGGCTTTGAGCCTCAGCTACGGAAGATTGTTGCCCAGATTCGTCCAGATCGACAAACATTATGCTGGAGTGCTACCTGGCCAAAGGAGGTTGAGCAGCTGGCTAGGCAGTCCCTTTATAACCCATACAAAGTGATTATAGGTTCTCCAGATTTAAAAGCTAACCATGCGATACGTCAACATGTTGACATTGTTTCTGAAAAGCAGAAATATGATAAATTGGTGAATTTGCTGGAGGATATCATGGATGGCAGTCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATCACACGGCAACTCCGCATGGATGGTTGGCCAGCACTTTCGATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTGTCAGAGTTCAGATCTGGAAAAAGTCCTATAATGACTGCGACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGATGTATGTAATAAATTACGACTTCCCAGGATCTCTTGAGGACTATGTTCATCGCATTGGTCGGACTGGCAGAGCTGGCGCAAAGGGAACTGCATATACATTTTTTACTGCTGCAAATGCTAGATTTGCCAAGGAACTTATAGGCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCAATGGCACGAGGAGCACCTCCTCCGCCTTCAGGTTATGGAGGTTTCCGTGGGAGAAGTTATAGCAGTCGCCCACTGAGATGA 1494 0.4518 MSRYDSRSGDPTSYRDRRTDSGLGAPTGYSSSSRKDHDDGGSPKKLNLDGLPHFEKNFYVESPEVRAMTDDEVNEYRRKRDITVEGRDVPKPVKSFHLAGFPEYVLQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHINAQPILEPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVAQIRPDRQTLCWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVSEKQKYDKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSPELAAMARGAPPPPSGYGGFRGRSYSSRPLR 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1362 497 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 246 254 IPR000629 -
Mibi11g1362 497 MobiDBLite consensus disorder prediction 471 497 - -
Mibi11g1362 497 CDD DEADc_DDX5_DDX17 105 300 - -
Mibi11g1362 497 Gene3D - 57 303 IPR027417 -
Mibi11g1362 497 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 94 122 IPR014014 GO:0003724
Mibi11g1362 497 Pfam DEAD/DEAH box helicase 118 289 IPR011545 GO:0003676|GO:0005524
Mibi11g1362 497 CDD SF2_C_DEAD 313 443 - -
Mibi11g1362 497 FunFam probable ATP-dependent RNA helicase DDX17 56 303 - -
Mibi11g1362 497 FunFam ATP-dependent RNA helicase RhlB 304 476 - -
Mibi11g1362 497 MobiDBLite consensus disorder prediction 1 17 - -
Mibi11g1362 497 MobiDBLite consensus disorder prediction 1 49 - -
Mibi11g1362 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 300 IPR014001 -
Mibi11g1362 497 SMART ultradead3 113 316 IPR014001 -
Mibi11g1362 497 Gene3D - 304 475 IPR027417 -
Mibi11g1362 497 Pfam Helicase conserved C-terminal domain 325 434 IPR001650 -
Mibi11g1362 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 473 IPR001650 -
Mibi11g1362 497 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 71 473 - -
Mibi11g1362 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 449 IPR027417 -
Mibi11g1362 497 SMART helicmild6 353 434 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1362 Mibi-ChrMibi11 32579339 32584724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1362 67 454 Eukaryotic Initiation Factors Gene Family AT3G19760 33.933 1.29e-74 239