Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1341 ATGCAAGACCCAACACTATTCCAATCCATAAGAAGCCAAGGATTCCCAGAACAACAAGAACAAGTCATCAAATGCCCACGATGTGATTCAACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAACCACGCCATTTCTGCAAGAACTGCAAAAGGTACTGGACCAAAGGAGGCACCCTCCGTAACATACCCATCGGAGGTGGAAGCCGAAAGAACACAAAGCGATCATCATCATCCAAACGATCACCCGCCACGTCATCATCTCCTCCGACAGCTTCAACAGCCGCCGGATCCTCTGACCCGACCCGAATTCAACCCGACCCGATTAGTGGGAGTTTTAAAAGTTCGCTCCTTTCATCATCATCGGCATCGTTTTCGTCATCTGGGGATGTGGGGATTGTTATGGAGGGTGTGAATCGAAATGGGTTGGTTTTGGAAATGGCGAAAGGTGGTGACTTTGATGGGAATTTGGGTTCTTCTGGTGAAGAAGGGGTTGTGGAGATGCATAGGAATGATGGTGGTGATTTGAGCTGTTGGAATAGTGGTAATGAGTGGTCTAATCTTGCGATGTATACAACAACACCAGGGTCGAGATTTCGGTAG 612 0.4739 MQDPTLFQSIRSQGFPEQQEQVIKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGTLRNIPIGGGSRKNTKRSSSSKRSPATSSSPPTASTAAGSSDPTRIQPDPISGSFKSSLLSSSSASFSSSGDVGIVMEGVNRNGLVLEMAKGGDFDGNLGSSGEEGVVEMHRNDGGDLSCWNSGNEWSNLAMYTTTPGSRFR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1341 203 ProSitePatterns Zinc finger Dof-type signature. 25 61 IPR003851 GO:0003677|GO:0006355
Mibi11g1341 203 MobiDBLite consensus disorder prediction 64 118 - -
Mibi11g1341 203 ProSiteProfiles Zinc finger Dof-type profile. 23 77 IPR003851 GO:0003677|GO:0006355
Mibi11g1341 203 MobiDBLite consensus disorder prediction 72 118 - -
Mibi11g1341 203 Pfam Dof domain, zinc finger 21 77 IPR003851 GO:0003677|GO:0006355
Mibi11g1341 203 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 118 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1341 Mibi-ChrMibi11 32278862 32279473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1341 15 82 C2C2-Dof Transcription Factor Family AT1G51700 79.412 4.26e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mibi11g1341 zf-Dof 1.2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1341 11 32278862 32279473 Mibi04g0558 04 10905860 10906585 CCT
Mibi11g1341 11 32278862 32279473 Mibi11g1341 11 32278862 32279473 ECH